PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01096.1_g00012.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family FAR1
Protein Properties Length: 870aa    MW: 99016.1 Da    PI: 6.6693
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01096.1_g00012.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR134.66.4e-1159127190
                     FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 
                              +fY+eYA+++GF++r+ + ++        k +f C k g r+ + ++              C+a+l+v+++ ++kw+vtk +++H+
  Sme2.5_01096.1_g00012.1  59 SFYDEYARRLGFTTRVCQLNQL-------KTDFLCDKVGLRRVSGES--------------CNAMLRVELKGQNKWVVTKYVKDHS 123
                              5***************998876.......789*********998877..............************************* PP

                     FAR1  87 Hela 90 
                              H+l+
  Sme2.5_01096.1_g00012.1 124 HSLV 127
                              *996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.3E-759127IPR004330FAR1 DNA binding domain
PfamPF105511.3E-27265356IPR018289MULE transposase domain
PROSITE profilePS5096611.214543579IPR007527Zinc finger, SWIM-type
PfamPF044341.4E-9543577IPR007527Zinc finger, SWIM-type
SMARTSM005752.0E-6554581IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009506Cellular Componentplasmodesma
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 870 aa     Download sequence    Send to blast
MDVERGNMHQ QGAITDDGED EPSESGEANV NGRSNAPDGD NIVEPQMGMV FPSGDQAKSF  60
YDEYARRLGF TTRVCQLNQL KTDFLCDKVG LRRVSGESCN AMLRVELKGQ NKWVVTKYVK  120
DHSHSLVYAN KVHCWRSHKH FAVTKKNEPE NNQSVGIVPS GVMYVSVDGN RIPVDMNHGA  180
TRTRPEESDQ TVKNTTLQSF SPRHCNQRRT LGRDAQNLLD YFKKMQAENP GFYYAIQLDE  240
DNRMSNVLWA DARSRNAYSH FGDAIMLDTM YRVNQCRVPF APFTGVNHHG QTILFGCALL  300
LDESEATFIW LFKTFLAAMN DRAPVSIITD QDTVIQSAVA QVFPETRHCI NKWHVLRGGQ  360
DRMAHVCQMF PNFQVELYNC INLTETVEEF ESYWEIILDK YDLKKNDWLQ SIYNKRRQWV  420
PVYFRDTFFA AISPNQEYEC SFFDGYVSQQ ITLPLFFRQY ERALENSFEK EIEADFDTIC  480
TTPPLKTPSP MEKQASTLYT KKIFLKFQQE LVETFVYTAN RIDGDGVISM FRVAKFEDDQ  540
KTYLVSLNIS ELKANCSCQM FECSGILCRH ILTVFTVTNI LTLPSHYILK RWTINAKSGA  600
ESDEHVQLHG IESMAQRYNS LCREAIRCAE EGAVSQETYN AALGALKEGG KKVALAKRNV  660
AKVSPPSSQV SGIGYDDRRT STYASEMTPL LWPRQDEMTK RFNLNDTGSP ARAVADLDPQ  720
RMAPVSLHRD DGHADNTVIL PCLKSMTWVM ENKTSVPANR VAVINLKLQD YSRTPSRESE  780
VKFQLSQVTL EPMLKSMAYI SEQLCTPANR VAVINLKLQD TETASGESEV KFQVSRDTLG  840
AMLRSMAYIR EQLSNTVESQ LETPAKKQRK
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006361134.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 3
RefseqXP_006361135.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 3
SwissprotQ9ZVC90.0FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBLA0A0V0IVH00.0A0A0V0IVH0_SOLCH; Uncharacterized protein
STRINGXP_009776131.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43522109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.20.0FAR1-related sequence 3
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]