PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01047.1_g00014.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 317aa    MW: 35102.6 Da    PI: 5.3662
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01047.1_g00014.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.32.1e-06164206855
                              HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               +r RR +i ++++ L ellP +   +++K   a+   + +++Ik+Lq
  Sme2.5_01047.1_g00014.1 164 SDRHRRMKIAEGIDALGELLPCS--KQGGK---ASQMDEIIDHIKYLQ 206
                              689*******************7..25555...556679999999998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.674156205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-8158211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.75E-5158208No hitNo description
SMARTSM003530.003162211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-6163207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MGEQNQPNAP ESQWAFLGRT DDSYYLPVHE LNKQYMAGVG TDGIHYFPVP SPLWIHDQQT  60
PHNYVEYLAE NVVSEVQADA SPEASGFRLV EGSADMIPQE IRYPRPYYEG VPLNCLIGSE  120
HPRGALTWDP RGDARHASGP CPEASAAGSS YPSKCSGKAR AALSDRHRRM KIAEGIDALG  180
ELLPCSKQGG KASQMDEIID HIKYLQFQMK CSLGRVLAAR DFRVVGAFER NELKPKTDVH  240
ILVTFQKNVD NLLISVGADW VANGFGHCIL DEQQIESLED TMGKLLEVNP SMTTQLLESK  300
GLFVMPMALA EGLHHRD
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754488e-84HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006355867.11e-150PREDICTED: uncharacterized protein LOC102578458 isoform X2
TrEMBLM0ZK861e-149M0ZK86_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000025121e-150(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA96461617
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.11e-12LJRHL1-like 1