PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01011.1_g00006.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 288aa    MW: 33135.3 Da    PI: 6.7394
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01011.1_g00006.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.82.3e-1495146155
                              CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              +r++h ++Er+RR+++N+ ++ Lr+l+P++   ++++ + a+i+  A++++k+L+
  Sme2.5_01011.1_g00006.1  95 QRMTHIAVERNRRRQMNDYLAVLRSLMPPS---YAQRGDQASIVGGAINFVKELE 146
                              79****************************...*******************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.52994145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.63E-1495150No hitNo description
Gene3DG3DSA:4.10.280.108.9E-1395149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.2E-1695165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-1195146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.7E-10100151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MALETVVFQQ DPFNYSHKDC NFYNLETFHN YDNFGYEGYN NYDSSNSSIP QSYNNNNNNN  60
SLPENIFPAE STVVSGRRKR RRTKCTKNEE EIAIQRMTHI AVERNRRRQM NDYLAVLRSL  120
MPPSYAQRGD QASIVGGAIN FVKELEQLLQ FLEVHKHVTK NQHHIQYNPF SEFFAFPQYS  180
TGNMAAGSMT TTEERQSAVA DIEVTMVESH ANVKVLSRKR PKQLLKIVNW LQAMCLTILH  240
LSVTTADHMV LYTFNVKVEE NCELNTVSEI ASAIHEMVTM IKEEAMSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17781RKRRR
27782RKRRRT
395106RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754501e-109HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015057803.11e-172transcription factor bHLH96-like
SwissprotQ9C7T47e-82BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A3Q7IQW01e-170A0A3Q7IQW0_SOLLC; Uncharacterized protein
STRINGSolyc11g010340.1.11e-171(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19962462
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.11e-77bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]