PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00925.1_g00014.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 500aa    MW: 56354.4 Da    PI: 6.4035
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00925.1_g00014.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.23.5e-09247294455
                              HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Sme2.5_00925.1_g00014.1 247 SHSLAERVRREKISERMRFLQDLVPGC----NKITGKAGMLDEIINYVQSLQ 294
                              8**************************....999*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.4E-16241308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.09E-10241298No hitNo description
Gene3DG3DSA:4.10.280.102.9E-16243307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.485243293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-6247294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-8249299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009637Biological Processresponse to blue light
GO:0009911Biological Processpositive regulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MNIALPEMLH NITSNGGNRS SELSVLERQQ VRMKWHQDQV QQQEMSYLNG QNDQLMNSFH  60
HTSEAHQFHG LINSLNELVT RAIKPDPCLE NNWGDFGTAG INGFGYVPVE AGHGGMSHPT  120
EMNYAISRTT SCPPTMADNA VSAVKPKETI LYSNRGRESF KKRKADKNQH LKEVAEEETT  180
DKKLKECVEE GDSSKVTSEK RSNKKSANNS SNSKENSDTS KEKSKITDDK KVDYIHVRAR  240
RGQATDSHSL AERVRREKIS ERMRFLQDLV PGCNKITGKA GMLDEIINYV QSLQRQVEFL  300
SMKLAAVTPR LDIDVDNFFN KDIFATSTSN FPPVGAGTSS EMLSMAQRQF NSLQQIVSSS  360
GFEMGILNLS EMALRRTTRA PVPIPEMFLD SSSINQVQSF PTWDTDLDNM YEMELQQGRS  420
AQFLPHPCTV NKGDLASSAD KVYWILLAEI DAERWFCLLS FRTHKGYEAI PLKSLILMYG  480
PLGIKVEEVN DAIHEMSREE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0143000.0BT014300.1 Lycopersicon esculentum clone 133550R, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015062388.10.0PREDICTED: transcription factor bHLH63-like
TrEMBLM0ZJ880.0M0ZJ88_SOLTU; Uncharacterized protein
TrEMBLM0ZJ900.0M0ZJ90_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000018880.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA65382330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34530.12e-54cryptochrome-interacting basic-helix-loop-helix 1