PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00861.1_g00004.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NF-YC
Protein Properties Length: 245aa    MW: 27530.1 Da    PI: 5.9485
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00861.1_g00004.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC127.54.9e-40491521101
                    NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaav 83 
                              ql++ w++q   i++ ++fknh+lP++r+kki+k+d dv+m+s eaP ll+kacelfi elt+r+ l+a e krrtlkk+d  ++v
  Sme2.5_00861.1_g00004.1  49 QLQVLWASQcdeIQQISNFKNHKLPISRMKKIMKSDRDVRMVSGEAPFLLAKACELFISELTFRASLQASEYKRRTLKKTDFMDVV 134
                              799****998889999********************************************************************** PP

                    NF-YC  84 trtdifdflvdivprdel 101
                              ++t+ifdflvd+   de+
  Sme2.5_00861.1_g00004.1 135 KQTEIFDFLVDVFSGDEI 152
                              ***********9987765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471133.02E-2528143IPR009072Histone-fold
PfamPF008081.4E-1771130IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.5E-2672146IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MRSPPTTSSI TPWQTNLTNQ QPKQRRLEAT TVQSSGDPDR HLNQHWQDQL QVLWASQCDE  60
IQQISNFKNH KLPISRMKKI MKSDRDVRMV SGEAPFLLAK ACELFISELT FRASLQASEY  120
KRRTLKKTDF MDVVKQTEIF DFLVDVFSGD EIEEEASGLW PGMGGSTSGV PYPYPPMEPP  180
APPMGQPAPL MGQPDPSGVV VPSHAMPWVP HSRYIHPSLQ AWEFLLQTDE DNPSATGGNS  240
RQGNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B9e-3156146292NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006351458.12e-64PREDICTED: nuclear transcription factor Y subunit C-1-like
RefseqXP_015165982.12e-64PREDICTED: nuclear transcription factor Y subunit C-1-like
RefseqXP_015165983.12e-64PREDICTED: nuclear transcription factor Y subunit C-1-like
RefseqXP_015165984.12e-64PREDICTED: nuclear transcription factor Y subunit C-1-like
RefseqXP_015165985.12e-64PREDICTED: nuclear transcription factor Y subunit C-1-like
RefseqXP_015165986.12e-64PREDICTED: nuclear transcription factor Y subunit C-1-like
RefseqXP_015165987.12e-64PREDICTED: nuclear transcription factor Y subunit C-1-like
RefseqXP_015165988.12e-64PREDICTED: nuclear transcription factor Y subunit C-1-like
SwissprotQ9SMP02e-51NFYC1_ARATH; Nuclear transcription factor Y subunit C-1
TrEMBLA0A3Q7H1D86e-61A0A3Q7H1D8_SOLLC; Uncharacterized protein
TrEMBLQ2VY186e-61Q2VY18_SOLLC; CONSTANS interacting protein 2a
STRINGSolyc06g072040.1.19e-62(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40872143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48590.12e-44nuclear factor Y, subunit C1
Publications ? help Back to Top
  1. Shi H,Chan ZL
    AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway.
    Plant Signal Behav, 2015.
    [PMID:24831307]
  2. Shi H,Chan ZL
    AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway.
    Plant Signal Behav, 2014. 9(7): p. e29109
    [PMID:25763489]
  3. Tang Y, et al.
    Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation.
    Mol Plant, 2017. 10(2): p. 260-273
    [PMID:27876642]
  4. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]