PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00835.1_g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 242aa    MW: 27277.8 Da    PI: 9.1312
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00835.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.84e-08120167455
                              HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              +h+ +Er RR +iN+++  L++++P +     k +  a +L + ++Y++sLq
  Sme2.5_00835.1_g00003.1 120 SHSLAERVRRGKINERLRCLQDIVPGC----YKTMGMAGMLDEIINYVQSLQ 167
                              8*************************8....35599999*********9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.45E-16114184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.40E-8114171No hitNo description
Gene3DG3DSA:4.10.280.108.7E-16116178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.027116166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-5120167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.6E-8122172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MMTIPCSSDM SSFNLQSSLE FSRQNNFTQV AEFQGSLQEI FQGNSQIQTK KEEINECQKR  60
KISDTPESSS AYSSPAASAT GNKRRNIKGR GKRVKSDVKE EEKPREVVHV RAKRGQATDS  120
HSLAERVRRG KINERLRCLQ DIVPGCYKTM GMAGMLDEII NYVQSLQNQV EFLSMKLTAA  180
SSYYDFNSES DILMSLQRAK AYEALKLPKM KKEIGCEVMS SSQVGPNYDH NFGSYPMLPN  240
NT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016567559.11e-144PREDICTED: transcription factor BEE 3-like
SwissprotQ8GWK76e-64BEE3_ARATH; Transcription factor BEE 3
TrEMBLM1A4N31e-140M1A4N3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000146561e-140(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA39712344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18400.17e-61BR enhanced expression 1