PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00813.1_g00008.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GATA
Protein Properties Length: 245aa    MW: 26797.5 Da    PI: 8.5014
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00813.1_g00008.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.62.3e-20130164135
                     GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                              C+nC tt+TplWR+gp+g+k+LCnaCG++++k+++
  Sme2.5_00813.1_g00008.1 130 CANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEER 164
                              ********************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.6E-18124176IPR000679Zinc finger, GATA-type
PROSITE profilePS5011413.85124160IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.05E-13126165No hitNo description
Gene3DG3DSA:3.30.50.103.4E-17128164IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.28E-13129161No hitNo description
PROSITE patternPS003440130155IPR000679Zinc finger, GATA-type
PfamPF003205.5E-18130164IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0009909Biological Processregulation of flower development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MIGVAGGVQK GGGGRGYGQE EVNGIGQSGT NTTTTTSSAF SMLFSHEYSE NMYSFSPSSS  60
SVDCTLSLGT PSTRLTNDSN HERRRSSSNC FWDILHPKQH LSTPPPSAQY KSTRANNNST  120
TTDPILARRC ANCDTTSTPL WRNGPRGPKS LCNACGIRFK KEERRASAAA AGANGGGGME  180
HQHMGSWIHQ HSQPQKMPCF SSATYGNEFR FIQDDDHHRD SDPIPFLPWR LSVADRPSLV  240
HDFTR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009603282.11e-105PREDICTED: GATA transcription factor 19-like
SwissprotQ8LC791e-54GAT18_ARATH; GATA transcription factor 18
TrEMBLM0ZVG91e-104M0ZVG9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000090311e-103(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38182346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50870.11e-53GATA family protein