PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00735.1_g00008.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 267aa    MW: 30314.9 Da    PI: 6.6755
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00735.1_g00008.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.35e-1289141155
                              CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                              ++ +h e+Er+RR+++ + ++ Lr+ lP  +    ++K s ++   +A +YI +Lq
  Sme2.5_00735.1_g00008.1  89 KKLMHREIERQRRQEMSTLYASLRQKLPLeN---IKGKRSTSDHILEAANYIEQLQ 141
                              5789*************************66...*********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.77E-1585161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.33E-1086145No hitNo description
PROSITE profilePS5088813.05288140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.7E-989141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-990159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00194146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MFPLQQDDDA NDSHRQLPFP LSQPYTNPSN FIFQQDLLTD FAPFDSLDLG DNNLTFNYNN  60
NDNNNNNKDQ RGNRLGNSSV VSTDDNKQKK LMHREIERQR RQEMSTLYAS LRQKLPLENI  120
KGKRSTSDHI LEAANYIEQL QKNVKNLEER REKLKKESIG LSNIPRSGSS TASDSSPAAI  180
VMVKECLDGM EILVNCGLNN EGFRLSRVLQ VLFQEGLTIV NCSCAKINNT TVLHTIRTEV  240
SSYQPRINVD VIQQKLADTI HDNAGFK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1149156RREKLKKE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2110204e-39AC211020.2 Solanum lycopersicum chromosome 6 clone C06HBa0003K02, complete sequence.
GenBankHG9755184e-39HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016577192.11e-129PREDICTED: transcription factor bHLH36-like
TrEMBLA0A1U8H1581e-128A0A1U8H158_CAPAN; transcription factor bHLH36-like
STRINGSolyc06g035490.2.11e-114(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59824109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51790.11e-28bHLH family protein