PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00697.1_g00011.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 573aa    MW: 64175.1 Da    PI: 7.5568
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00697.1_g00011.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.62.9e-10431477455
                              HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                              +h e+Er+RR+++N+ f  Lr ++P+ +      K++Ka+ L  A+ +I ++q
  Sme2.5_00697.1_g00011.1 431 NHVEAERQRREKLNQLFYALRAVVPNiS------KMDKASLLGDAIFHITDMQ 477
                              799***********************66......***************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.3E-5345233IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088815.364427476IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.77E-16430492IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.76E-11430481No hitNo description
PfamPF000107.1E-8431477IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-14431492IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-12433482IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 573 aa     Download sequence    Send to blast
MTMMWSDEDK TMVAAVLGTK AFDYLMSSLV SAECSLMAMG SDENLQNKLS DLVECPNAAN  60
FSWNYAIFWQ ISRSKSGELV LGWGDGCCRE AREGEESEVT RILNLRLEDE AQQKMRKRVL  120
QKLHMFFGGT DEDNFVFRLD RVTDIELFFL ASMYFSFPRG QGGPGKCFGA GKHVWLSDVM  180
KLSVDYCSRS FLIKSAGMQT IVLIPTDVGV VELGSVRTIP ESLELVHSIK SCFSSFIARV  240
RAKQAASVTV VAEKKDGNNA MFPSVVPYEQ SKGNPKIFGQ NLESGCIQIR EKLAVRKAVD  300
RPLEMYRSGN RHPFMNAQNG VHPVPWASFG NVKPGNPVEL YNRQAHPNNL RELVNGGREE  360
LRLNNLHHQK PGTMQIDFTN SRPVVSPVQT VESEHSDVEV SCKENHTGPA DERRPRKRGR  420
KPANGREEPL NHVEAERQRR EKLNQLFYAL RAVVPNISKM DKASLLGDAI FHITDMQKRI  480
RDAENELERL GRTSRDAADI NIEAASDEVI VRVECPLETH PVSRVIEAFK EAQVSVVESK  540
LAAGNDTVYH TFVVKSSGSE QLTKEKLLAA VSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yz6_A4e-26412345193Transcription factor MYC3
4rs9_A4e-26412345193Transcription factor MYC3
4rqw_B4e-26412345193Transcription factor MYC3
4rqw_A4e-26412345193Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1412420RRPRKRGRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00100PBMTransfer from AT1G01260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755170.0HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006345551.10.0PREDICTED: transcription factor bHLH13-like
SwissprotQ9LNJ50.0BH013_ARATH; Transcription factor bHLH13
TrEMBLA0A0V0IRQ00.0A0A0V0IRQ0_SOLCH; Putative transcription factor bHLH13-like
STRINGPGSC0003DMT4000180460.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA35852348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.30.0bHLH family protein