PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00648.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NAC
Protein Properties Length: 252aa    MW: 28862.4 Da    PI: 5.9667
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00648.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM69.31e-2151392128
                      NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiy..kvePwdLpk........kvkaeek...ew.yfFskrdkkyatgk 72 
                              + GfrFhPtd e +  +L + ++g+ ++ + +  ++vd y  +++Pwd+ +            +e+   ++ yf +k  kk ++++
  Sme2.5_00648.1_g00002.1   5 QEGFRFHPTDAEAI-TFLLRFIAGEVMNDSGFiTTHVDTYnnQLDPWDIYSrgvpcgndD---GEDdcsQYrYFITKL-KK-KSES 84 
                              68************.899999999998887873456697722579****73466654321...222232332444444.43.4568 PP

                      NAM  73 rknr.atksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                              r nr + ++g Wk+   +k+v +++g+++g kk++ + + ++ + ++ +W+m+ey+l
  Sme2.5_00648.1_g00002.1  85 RYNRnVGNKGCWKQNI-SKPVQKNGGQVIGYKKSMSYVN-KSYDRQNGHWLMKEYEL 139
                              99996788*****775.5999999*************95.555559*********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.45E-213161IPR003441NAC domain
PROSITE profilePS5100522.6394162IPR003441NAC domain
PfamPF023652.4E-146139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MENLQEGFRF HPTDAEAITF LLRFIAGEVM NDSGFITTHV DTYNNQLDPW DIYSRGVPCG  60
NDDGEDDCSQ YRYFITKLKK KSESRYNRNV GNKGCWKQNI SKPVQKNGGQ VIGYKKSMSY  120
VNKSYDRQNG HWLMKEYELS SKILDKFNND RRDYVFCAIK MRTPTKDSKK LVDNASKVCM  180
NILEHQSPMA AESMNLEHQT LVAAKSTNLE HQSSAVVLEA LQGGSVLELE LLDFDYQYVP  240
ADFECLQSIT DS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015169695.12e-98PREDICTED: NAC domain-containing protein 78-like
TrEMBLM1CCG74e-97M1CCG7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000644977e-98(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22191254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08790.12e-13NAC family protein