PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00622.1_g00019.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bZIP
Protein Properties Length: 296aa    MW: 33654.9 Da    PI: 6.001
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00622.1_g00019.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_129.12.2e-09118158441
                              XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHH CS
                   bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLee...kvkeLeae 41 
                               k  rr+++NReAAr+sR RKka+i++Le    + ++Le+e
  Sme2.5_00622.1_g00019.1 118 AKTLRRLAQNREAARKSRIRKKAYIQQLESsriRLAQLEQE 158
                              5889************************9632255555554 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1705.3E-8114162No hitNo description
SMARTSM003384.7E-7115194IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.772117161IPR004827Basic-leucine zipper domain
PfamPF001703.9E-7118158IPR004827Basic-leucine zipper domain
CDDcd147087.55E-23119171No hitNo description
SuperFamilySSF579594.18E-7119161No hitNo description
PROSITE patternPS000360122137IPR004827Basic-leucine zipper domain
PfamPF141446.6E-30210282IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MLHQSSSVMP EHFINKESSS TGGYDLGELD DQALFLYLDA QDPSSQQDQI QNNSEMMRPP  60
TLNIFPSQPM HVEPSSTKEN AGFVSSGSEK SSEPSMMELS NSKNNVLSTS SGPEPKVAKT  120
LRRLAQNREA ARKSRIRKKA YIQQLESSRI RLAQLEQELQ RARAQGFHFA GSALLGGDQG  180
LPSNIGNMSS DAAVFDMEYS RWLEEHHRLM CELRNALTEH FPENDLRIYV ENCVTHYDEM  240
MNLKSMLIKS DVFHLISGMW KTPAERCFIW MGDFRPSELI KVRVYALSDH LQDNYS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755221e-116HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006362280.10.0PREDICTED: transcription factor TGA2-like
SwissprotQ391404e-64TGA6_ARATH; Transcription factor TGA6
TrEMBLK4D2A90.0K4D2A9_SOLLC; Uncharacterized protein
STRINGSolyc10g078670.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22792145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06839.11e-102bZIP family protein