PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00622.1_g00011.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 378aa    MW: 41327.1 Da    PI: 9.3481
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00622.1_g00011.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.31.2e-12311356655
                              HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              +++Er RR ri +++ +L+el+P+     +k  + a++L +AveYIk Lq
  Sme2.5_00622.1_g00011.1 311 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLAVEYIKGLQ 356
                              689*********************7....688*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.894305355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-15308369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.12E-11309358No hitNo description
Gene3DG3DSA:4.10.280.105.9E-14310366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-12311361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-9311356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048573Biological Processphotoperiodism, flowering
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MDSSEFEKNQ NSSGLLRFRS APSSFLENFI DGVGNNGNMA TENKGLSSKF NLAGLNNQLV  60
SQNSLDSKVF ANLSSNSQLP PQYPRQNSTA HVVGSVEGGG GYRVMGSLLG NNNHQGQNKL  120
ASNLMRQNSS PAGLFSQLNS LNGYATLKGG AGGYRIANAA NGDSNPSSSR LKDHFGFSSV  180
TPSSLGMLSR ISEVDNESSI AATLNDNEKR LDGNSEAQLY NMGFPFNSWS DPSQFQQTLT  240
GHKRELDSEG NKLFSNVQIE ELGNRSSILS HHLSLPKTPA DIAAMEKLLH FQDTIPCKIR  300
AKRGCATHPR SIAERVRRTR ISERMRKLQE LVPNMDKQTN TADMLDLAVE YIKGLQKQYK  360
VLTDCRANCK CSAMQKPD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00308DAPTransfer from AT2G42280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006351215.20.0PREDICTED: transcription factor bHLH130-like
TrEMBLM1AEJ40.0M1AEJ4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000210620.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51942437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.11e-93bHLH family protein