PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00622.1_g00009.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 422aa    MW: 46392.3 Da    PI: 8.3362
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00622.1_g00009.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.82.2e-09197244455
                              HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              +h+ +Er RR++iN ++  L+el+P +    sk    a++L + +++++sLq
  Sme2.5_00622.1_g00009.1 197 SHSLAERARREKINARMKLLQELVPGC----SKISGTAMVLDEIINHVQSLQ 244
                              8*************************9....78899***************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.27E-13191251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.80E-9191248No hitNo description
PROSITE profilePS5088814.64193243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-13193249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.1E-7197244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.6E-9199249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MDNLIESMEA RSENCGAKMG EIGAGFHQFG EEILSVTSEA GSSFTALLGL PANQAVELLV  60
HSPETDKMTS DKLTLTEPHT PYYGYPPPPP PPPIFPSDIA LIDRASKFSV FAPAGNSNSP  120
ESNSTLSNSG SKSLFPILNA SSNPIVNPKS TKRKEREKKG KETTKKGKKS ANNTSEDAGE  180
KLPYVHVRAR RGQATDSHSL AERARREKIN ARMKLLQELV PGCSKISGTA MVLDEIINHV  240
QSLQRQVEGD LNIHRKSRKI TVASLNSSNM ILGCFLSMRL AAVNPRVDFN LDSLFAAEVS  300
SIAMRLVRSG SHVESNLQDM VVPPIWAEGQ TSGNRNQYRH LWHFEGFHQP VWGRLEDNSS  360
FVTPENSLLT YDSSANSDAD FTLFLPSADI PCTVSVRSNK KEDIGKLKRL HFQGETHSKF  420
YG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754491e-89HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006351217.10.0PREDICTED: transcription factor bHLH48-like
TrEMBLM1AEN90.0M1AEN9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000211300.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40292342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57800.23e-55bHLH family protein