PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00595.1_g00011.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 137aa    MW: 15319.7 Da    PI: 6.2678
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00595.1_g00011.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.25.6e-202071256
                      AP2  2 gykGVrwdkkrgrWvAeIrdpseng..krkrfslgkfgtaeeAakaaiaarkklege 56
                             +y+GVr+++ +g+++AeIrd       + +r++lg+f taeeAa+a+++a+ +++g+
  Sme2.5_00595.1_g00011.1 20 KYRGVRRRP-WGKFAAEIRD----SarQGARVWLGTFNTAEEAARAYDRAAYSMRGH 71
                             8********.**********....33334**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.20E-182079No hitNo description
SMARTSM003801.1E-332084IPR001471AP2/ERF domain
PROSITE profilePS5103223.7492078IPR001471AP2/ERF domain
PfamPF008471.7E-152071IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-312080IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-232079IPR016177DNA-binding domain
PRINTSPR003679.1E-122132IPR001471AP2/ERF domain
PRINTSPR003679.1E-124460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MEQDQSSHGR KTNGGGGEIK YRGVRRRPWG KFAAEIRDSA RQGARVWLGT FNTAEEAARA  60
YDRAAYSMRG HLAILNFPEE YNLPSSSSHF YSGGTSSLSS MASSSSSSSR QVLEFEYLDD  120
KLLEELLDCD EEPNKRN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-402013514127Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755211e-151HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004247924.26e-55ethylene-responsive transcription factor ERF096
SwissprotQ9LTC53e-42ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A2G9I9T09e-58A0A2G9I9T0_9LAMI; Uncharacterized protein
STRINGSolyc09g089910.1.12e-54(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23220.11e-25ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]