PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00592.1_g00005.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 660aa    MW: 72456.2 Da    PI: 4.8701
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00592.1_g00005.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.84.6e-14482528455
                              HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              +h  +ErrRR+++N++f  Lr+l+P       +K++Ka+iL  ++eY+k+L+
  Sme2.5_00592.1_g00005.1 482 NHVLAERRRREKLNERFIILRSLVPFV-----TKMDKASILGDTIEYVKQLR 528
                              7999**********************8.....8*****************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.1E-17151221IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.688478527IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-11482527IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.53E-16482532No hitNo description
SuperFamilySSF474593.79E-18482541IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.1E-19482541IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.3E-18484533IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0010214Biological Processseed coat development
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 660 aa     Download sequence    Send to blast
MQAQIHGLTP TENYRNRMFS VHRPIKSYQA SANAVGLPGP LARLVADPST VVCIPLLDGG  60
VELGTTERVG EDIGFIHHIK SFVTEQPLPK PALSEHSTSN PTVFSEPCFY SSNTPSSIDI  120
CPDGRIAGEE ENEDEDARKK MIEQKMILNP PNVDTIRGKA YSKKHHIWIV GANEVDSKVF  180
CRAILAKTVV CIPLLDGVVE LGTTERVEED IGFIHHIKSF FTEQPPPKPA LSEHSTSNPT  240
AFSEPCFYSG STPSSIDICP DGRTAREEEN EDEDEEEDDD EAELGSNGIA VQSGVGSAEA  300
SELMQLDMSE AIRLGSPDDG SNNMDSDFHL VGVSQAGNTA ESFKAETAIS WANFQDLQHV  360
PGVPIYDKLS QEDNHYSQTV SAVLEHLSNT STTVMGCISH DSAQSAFTSW PTICSPNPSR  420
HDNGGGSRQW LLKSILFTVP FLHNNKLHQS TEAESPKLRE MAVDSSATAS QFQKEQEEPS  480
GNHVLAERRR REKLNERFII LRSLVPFVTK MDKASILGDT IEYVKQLRKK VHDLEARARH  540
TQAITDADEN SGTATVKGKR RMEESTGGGA DEEVLQVQVS IIENDALVEL RCPYKEGLLL  600
DIMQMLRELK VEVVAIQSSL NTGILVAELR AKVVVSWRGQ IKKSTAGPVK KFCCSGLESP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-14476536362Transcription factor MYC2
5gnj_B2e-14476536362Transcription factor MYC2
5gnj_E2e-14476536362Transcription factor MYC2
5gnj_F2e-14476536362Transcription factor MYC2
5gnj_G2e-14476536362Transcription factor MYC2
5gnj_I2e-14476536362Transcription factor MYC2
5gnj_M2e-14476536362Transcription factor MYC2
5gnj_N2e-14476536362Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1486491ERRRRE
2487492RRRREK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP0065030.0KP006503.1 Solanum melongena anthocyanin-related transcription factor TT8 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001275098.10.0transcription factor TT8-like
SwissprotE3SXU41e-138BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBLA0A0C5C4V80.0A0A0C5C4V8_SOLME; Solanum melongena anthocyanin-related transcription factor TT8 mRNA
STRINGPGSC0003DMT4000335690.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA90282022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.11e-52bHLH family protein
Publications ? help Back to Top
  1. Hellens RP, et al.
    Identification of Mendel's white flower character.
    PLoS ONE, 2010. 5(10): p. e13230
    [PMID:20949001]