PlantTFDB
Plant Transcription Factor Database
PlantRegMap/PlantTFDB v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00563.1_g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 335aa    MW: 37632.9 Da    PI: 6.8003
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00563.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.21.6e-0958141154
                              CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC.................................TTS-STCHHHHHHHHHHHHHH CS
                      HLH   1 rrrahnerErrRRdriNsafeeLrellPkas..............................kapskKlsKaeiLekAveYIksL 54 
                              r++ +  rE+ RRdr+N+ f eL + l                                   ++ +K++Ka+iL  +++ +k+L
  Sme2.5_00563.1_g00003.1  58 RKVQKADREKLRRDRLNEQFMELGKTLEYHRayqtpeyliqclhtaleqstkdpldqklyaDPDRPKNDKASILSDTIQVLKDL 141
                              5677889**********************555****************************8888888**************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.67457141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.45E-115887IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-758141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-105885IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-663147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-10118167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.45E-11121157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MDQLNHGGLY QSNQLPNHCL TELSPLPSDV SMPPNGLHSE SSSKQKPEAE LKDSIAARKV  60
QKADREKLRR DRLNEQFMEL GKTLEYHRAY QTPEYLIQCL HTALEQSTKD PLDQKLYADP  120
DRPKNDKASI LSDTIQVLKD LTSQVGRLKS EYAALTDESR ELTQEKNDLR EEKASLKSDI  180
ESLNAQYQQR MRTMYPWAGM DHSMVIHPPS YPYPMPVPVP TGPVPMHRSQ PTQYMSPIIQ  240
PGSVPRQESR NRSSEQGESR IEKREDSNEV ATDLELKTPG SASEQDLSSG QKKSRKLPKK  300
DNSLTDGSSS SRCSSSHSVQ AVSSNSVVRG TKTDD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1291299KKSRKLPKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2408546e-91AC240854.5 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-25n22 map 1, complete sequence.
GenBankAC2408596e-91AC240859.6 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-138h16 map 1, complete sequence.
GenBankHG9754406e-91HG975440.1 Solanum pennellii chromosome ch01, complete genome.
GenBankHG9755136e-91HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015058498.11e-179transcription factor bHLH121 isoform X1
SwissprotQ9LT238e-63BH121_ARATH; Transcription factor bHLH121
TrEMBLA0A3Q7EUG31e-176A0A3Q7EUG3_SOLLC; Uncharacterized protein
STRINGSolyc01g111130.2.11e-175(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA54562434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.11e-60bHLH family protein
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]