PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00544.1_g00012.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 536aa    MW: 59635.4 Da    PI: 8.6645
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00544.1_g00012.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.21.4e-084187354
                             HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                             ++h ++Er+RR+riNs +++L++l   +     +K +K  +L++Av  +k+L
  Sme2.5_00544.1_g00012.1 41 VTHAIAERKRRERINSHLHTLKKLFSYL-----PKKDKPRVLTEAVTQLKEL 87
                             68**********************9998.....6999999999999888877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.96E-103094IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.7473887IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.8E-64187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.22E-74192No hitNo description
Gene3DG3DSA:4.10.280.105.6E-84293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.1E-54493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2603.3E-6124190No hitNo description
SuperFamilySSF550214.35E-5125192No hitNo description
CDDcd048730.00205125189No hitNo description
SuperFamilySSF643561.19E-33197331IPR011012Longin-like domain
Gene3DG3DSA:3.30.450.601.6E-40199331No hitNo description
PRINTSPR003141.4E-27202222IPR001392Clathrin adaptor, mu subunit
PRINTSPR003141.4E-27291318IPR001392Clathrin adaptor, mu subunit
PfamPF009282.4E-37372502IPR028565Mu homology domain
SuperFamilySSF494471.31E-39372503IPR028565Mu homology domain
Gene3DG3DSA:2.60.40.11701.4E-39372507No hitNo description
PROSITE profilePS5107222.012373536IPR028565Mu homology domain
PRINTSPR003141.4E-27447474IPR001392Clathrin adaptor, mu subunit
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006886Biological Processintracellular protein transport
GO:0016192Biological Processvesicle-mediated transport
GO:0005802Cellular Componenttrans-Golgi network
GO:0005829Cellular Componentcytosol
GO:0030124Cellular ComponentAP-4 adaptor complex
GO:0030131Cellular Componentclathrin adaptor complex
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MLSSLQGCNG FFQLVEHQRK NNNGDDEKSN TKKNKSKDAA VTHAIAERKR RERINSHLHT  60
LKKLFSYLPK KDKPRVLTEA VTQLKELRKN IAQQLELSSL FIPSENDVVI ANYCDINEEQ  120
IVKTTICCED RPGLNRDLSS AIRSVQGRVI KAEMATVGGR TKAELVVVLG KANGGEKDLG  180
QLKRALKAVV ENRAVGFESS RGDSIVFRDY RGDVPKGSAE IFFRKVKFWK EDGGEEAPPV  240
FNVDGVNYFH VKVVGLLFVA TSRTNLSPSL VLELLQRIAR VIKDYLGVLN EDSLRKNFVL  300
VYELLDEVVD FGYVQTTSTE ILKSYIFNEP IMIDAGRLPP LGPAAMFMQG TKRMPGTAIT  360
KSVVANEPGG RKREEIFVDI IEKISITFSS SGYILTSEID GTIQMKSYLT GNPEIRLALN  420
EDLGIGRDGG RAAYDYGGST GSGAVILDDC NFHESVQLDS FDVDRTLTLV PPDGEFPVMN  480
YRITQEFKPP FRINTLIEEA GSLKALKKLK FVVAKCRLSK CLHVFCVNVT TPNGRE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4hmy_M8e-5520149912285AP-1 complex subunit mu-1
4p6z_M8e-5520149912285AP-1 complex subunit mu-1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14651ERKRRE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004237988.10.0PREDICTED: AP-4 complex subunit mu
SwissprotQ9SB500.0AP4M_ARATH; AP-4 complex subunit mu
TrEMBLK4BU610.0K4BU61_SOLLC; Uncharacterized protein
STRINGSolyc04g076230.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA804722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56770.12e-28bHLH family protein