PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00537.1_g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 559aa    MW: 61792.5 Da    PI: 7.9268
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00537.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.30.00032258275219
                              HHHHHHHHHHHHHHHHHH CS
                      HLH   2 rrahnerErrRRdriNsa 19 
                              r +h++ E+rRR++iN++
  Sme2.5_00537.1_g00003.1 258 RSKHSATEQRRRSKINDR 275
                              889*************96 PP

2HLH16.41.7e-052993272355
                              HHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH  23 LrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              Lr ++P++    ++K +Ka+ L +++eYI+ Lq
  Sme2.5_00537.1_g00003.1 299 LRGIIPNS----DQKRDKASFLLEVIEYIHFLQ 327
                              89999998....9******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.108.2E-17253347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-9256345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508889.343256326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.79E-9258331No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009742Biological Processbrassinosteroid mediated signaling pathway
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 559 aa     Download sequence    Send to blast
MELPQPRPFG TEGRKTTHDF LSLYSPVQQD PRPPQGGYLK THDFLQPLEQ AEKTLRREET  60
KVEVATVEKP PPPVAATPSG EHLLPGGIGT FSISYLHQRV PKPEASLFSV AQASSTDRND  120
ENSNCSSYTG SGFTLWDESA VNKGKTGKEN SGGDRHILRG VNTGRVQPTT SLEWQSQSSS  180
NHKHNTTALS SLSSAQQSPP LKSQSFLHMI TSAKSAQDDD DDDEEDFVIK KETESHPRGN  240
LSVKVDGKGN NQKPSTPRSK HSATEQRRRS KINDRHVYDL VDSLNIENLF DMESLSIMLR  300
GIIPNSDQKR DKASFLLEVI EYIHFLQEKV HKYEESYQGW DNETLKLPLS KYHRTTHGIS  360
NHPQCTINAS GAALTYAGKF DDSTMRISST NPVNVQKLES NISTTGLKEN GQQPGLRNKP  420
TTLPMHPNTF STKLIPDSDK LESKSHSQFS LSRSHMTDYA NPKSQELSIE SGTISISSAY  480
SQGLLNTLTQ ALQKSGVDLT QASISVQIDL GKRANGRVNS SSSTIKGDDV STSNQLIPKS  540
GVTITREELD HAFKRRKTN
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00498DAPTransfer from AT5G08130Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0137860.0BT013786.1 Lycopersicon esculentum clone 132679F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015070938.10.0PREDICTED: transcription factor BIM1 isoform X2
TrEMBLK4BKX40.0K4BKX4_SOLLC; Uncharacterized protein
STRINGSolyc03g114720.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA39692345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.42e-91bHLH family protein