PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00515.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GATA
Protein Properties Length: 147aa    MW: 16142.9 Da    PI: 10.4814
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00515.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA30.16.5e-102039120
                     GATA  1 CsnCgttkTplWRrgpdgnk 20
                             C+ CgttkTplWR gp g+k
  Sme2.5_00515.1_g00002.1 20 CADCGTTKTPLWRGGPAGPK 39
                             ******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501149.5121437IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.6E-51538No hitNo description
Gene3DG3DSA:3.30.50.103.5E-71837IPR013088Zinc finger, NHR/GATA-type
PfamPF003202.4E-72039IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MSGQNQTPER VSSDTNQKTC ADCGTTKTPL WRGGPAGPKE PEEAKSSLGI EQRRQKNQRS  60
LTNKSIVNHH HHHQNQSSNS SSSGESTTSN AVMKNACIPF KKRLQHFGRE VGLQRPRSSS  120
ATHRRKLGDE EQAAFLLMAL SCGSVYA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004252918.13e-55GATA transcription factor 16-like
TrEMBLA0A3Q7JFI86e-54A0A3Q7JFI8_SOLLC; Uncharacterized protein
STRINGSolyc12g099370.1.11e-54(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19992362
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.14e-22GATA transcription factor 16