PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00502.1_g00009.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 255aa    MW: 27887.7 Da    PI: 8.0699
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00502.1_g00009.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.16.5e-1362108354
                              HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                              ++h+e+ErrRR+riN  + +Lr ++P        K++Ka+ L k++ +Ik+L
  Sme2.5_00502.1_g00009.1  62 KNHSEAERRRRERINGHLGTLRNIIPGT-----NKMDKAALLAKVIGHIKEL 108
                              58*************************6.....5****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.99659108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-1062108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-1363109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-1363112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.5E-1165114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MEFFSSFNGL DDVYGGFQGI IGNGLPSSSS LILDNESGEL VKAMVKPGGK GVNPEKALIA  60
LKNHSEAERR RRERINGHLG TLRNIIPGTN KMDKAALLAK VIGHIKELRV NAAEASKGVL  120
VPTDIDEVKV EQQAEGSDGA TYSVKASLCC DYKHELISDL RQALNTLPLK TLRAEIATLG  180
SRMVSVFVIT EGDERNIEDT ERCQLLITSV RQALRSVLDK FYASEEFSSR STISSKRRRV  240
SLLNSSSSSS LGDFW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16772ERRRRE
2235239KRRRV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754460.0HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006348853.11e-158PREDICTED: transcription factor bHLH30-like
TrEMBLA0A0V0HT981e-158A0A0V0HT98_SOLCH; Putative transcription factor bHLH30-like
STRINGPGSC0003DMT4000526221e-158(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA119892123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.12e-33bHLH family protein