PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00475.1_g00013.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 67aa    MW: 7931.54 Da    PI: 6.9731
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00475.1_g00013.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.40.000144764219
                             HHHHHHHHHHHHHHHHHH CS
                      HLH  2 rrahnerErrRRdriNsa 19
                             r +h+e E+rRR +iN++
  Sme2.5_00475.1_g00013.1 47 RSKHSETEQRRRIKINER 64
                             899*************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.4E-44564IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 67 aa     Download sequence    Send to blast
MVRTVKNHHE EDEEDDVEFS SRTPDGSSTQ KGKLEEKSND GKVSSHRSKH SETEQRRRIK  60
INERQFY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755155e-38HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010317826.11e-25PREDICTED: transcription factor BIM2
RefseqXP_015070909.11e-25PREDICTED: transcription factor BIM2
TrEMBLA0A0V0I1692e-24A0A0V0I169_SOLCH; Putative transcription factor BIM2-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA89471821