PlantTFDB
Plant Transcription Factor Database
PlantRegMap/PlantTFDB v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00417.1_g00014.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 345aa    MW: 38778.8 Da    PI: 4.7347
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00417.1_g00014.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH322.2e-102703101055
                              HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              rrRR+riN+++  L+ l+P+      +K++ +++Le+Av Y+k Lq
  Sme2.5_00417.1_g00014.1 270 RRRRERINERLRILQNLVPNG-----TKVDISTMLEEAVTYVKFLQ 310
                              9******************97.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.034260309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.37E-14261325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-12265320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.5E-11266315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-7270310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MEHVGGFFDE EWESLSKLFS TTETADFMLQ LQGDHGLLSM NGNDNGGLSY GTDNPPVAFG  60
HDETDNNFLY FSQESSITSC GSDHGMFFTN NPSIHEHLQH SNNVDDVNNQ LTHVAIDDNI  120
NPDAYQSIDF FDMDSKNLES LCINQDFQTE MVCDQLENAG ISPVSDKEMQ LKRKFEKVAP  180
ENFKKKSRGS QNAQKSSTKK AQPKRGKKNQ KMTQISNEEG EEETNNQIGQ SSSCCSSEDD  240
SNASQELNGG KGKSRASRGA ATDPQSLYAR RRRERINERL RILQNLVPNG TKVDISTMLE  300
EAVTYVKFLQ LQIKLLSSDE LWMYAPLAYH GMDIGIYQKM LPNLQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754431e-153HG975443.1 Solanum pennellii chromosome ch04, complete genome.
GenBankHG9755161e-153HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015158284.10.0PREDICTED: transcription factor bHLH84
TrEMBLM1BXX50.0M1BXX5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000554460.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA63922101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27740.17e-41root hair defective 6-like 4