PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00411.1_g00009.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 265aa    MW: 30769.1 Da    PI: 7.582
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00411.1_g00009.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.93.2e-1296141454
                              HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                               h + Er+RR++++++f+ Lr+llP+      +K +K+++L  ++eY++sL
  Sme2.5_00411.1_g00009.1  96 HHMISERKRREKLRESFQHLRSLLPPG-----TKKDKSSVLASTTEYLSSL 141
                              68899********************97.....8****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.06E-1191146No hitNo description
PROSITE profilePS5088814.65992141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.42E-1693161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.6E-1096141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.1E-1496159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.5E-1398147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MNFFPKEFTK QTEETQTLTQ FQGLQFPRIE GEDDAIRQAY LAVMMLSSSP SHHSSSRGQI  60
QENLTRDDYR LITRKTSAFS RQEGIQMNRA RSTQVHHMIS ERKRREKLRE SFQHLRSLLP  120
PGTKKDKSSV LASTTEYLSS LKHQVEELCK RNEILEAQLL TRKMFSQFQQ NGSGRVDVYI  180
TNIEERIVDL QVIARGKCNI LDLVNCLMEF LKMANYVNLV AIDANTTMVQ SCPHAIITLR  240
LTIQGEEWDE YAFLEETKRI VEDMT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1100105ERKRRE
2101106RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755241e-111HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006353540.11e-125PREDICTED: putative transcription factor bHLH041
SwissprotQ9LTS47e-38BH041_ARATH; Putative transcription factor bHLH041
TrEMBLM0ZHH81e-125M0ZHH8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000008831e-106(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45672339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.12e-31bHLH family protein