PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00407.1_g00004.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 356aa    MW: 39818.4 Da    PI: 4.8805
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00407.1_g00004.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.53.2e-15176223355
                              HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              + h  +Er+RR+r+ + f +L +l+P++     kKl+Ka+iLe A++YIk+L+
  Sme2.5_00407.1_g00004.1 176 QDHVLAERKRRERLTQYFITLSTLIPNL-----KKLDKASILEDAIKYIKQLE 223
                              56999***********************.....9*****************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.558173222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.8E-13176223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-16177234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.53E-17178235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.88E-16178227No hitNo description
SMARTSM003533.7E-16179228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MDISSVTWWS EMDVMNINDL EYIDHGQTMT TFEDFPFSND PFITSCTNDN IQSSQAAGIF  60
EENPSFCNST NSINYQNTTS FSPPSSSSPS VISFSNSNSP SATTTTAVQN NFKNLNSASV  120
KSEVPSGTTI NFSSSNISPD SDYDDSKELL QAMGFGGGDI TQTKKMSYSR TPLQAQDHVL  180
AERKRRERLT QYFITLSTLI PNLKKLDKAS ILEDAIKYIK QLEEQVKCLD DEANYKEPVK  240
RSRLLSNYED FSTCDENSNK SVPDIEVRVS DGNVLIRVCC KKQSGIIKKI FSQVEMFNLT  300
ITSSSAIPFG YNTTHITIVA KMDHQLNMTT EYIKNKIRSS IMKLINSHEE ANTLVA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1181186ERKRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006357745.10.0PREDICTED: transcription factor bHLH18-like
TrEMBLM1D0K41e-174M1D0K4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000786991e-175(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45081443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.15e-42bHLH family protein