PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00407.1_g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 295aa    MW: 32974.4 Da    PI: 8.4463
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00407.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.41.5e-14111158355
                              HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              + h ++Er+RR+r+ ++f  L +l+P++     kKl+Ka++L  A++YIk+L+
  Sme2.5_00407.1_g00003.1 111 QDHVMAERKRRERLTQRFIALSTLIPNL-----KKLDKATVLGDAIKYIKQLE 158
                              6799************************.....9*****************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.955108157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-12111158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.8E-18112174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.96E-13113162No hitNo description
SuperFamilySSF474591.01E-17113178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-16114163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MNDHIFVNES QMMGPFNELP FNSKPFSTFS PPPPSSIIIS NNSYSKTQFD NLNTVKVKRE  60
VPSGTAINFS SSVKSMDSDF GDIEAMGFGA AETIIITEQK KSYSRTSVQA QDHVMAERKR  120
RERLTQRFIA LSTLIPNLKK LDKATVLGDA IKYIKQLEEQ VKSLEEKTKK CSEEPAAKRP  180
RLASSYDDSS SSDEISSVST DRSLPDIEVR ASDGNILIRI YCKKQNGIMK EIFNELDKLN  240
LSIISCSVMP FGYNTSHITV ITQMDHKLTS LTPNHVANRI RAAVMKEEAS SFTAQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1116121ERKRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755141e-102HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004233615.11e-148PREDICTED: transcription factor bHLH18-like
RefseqXP_010316043.11e-148PREDICTED: transcription factor bHLH18-like
TrEMBLK4BCX91e-148K4BCX9_SOLLC; Uncharacterized protein
STRINGSolyc02g091810.1.11e-147(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45081443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-39bHLH family protein