PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00407.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 305aa    MW: 34900.8 Da    PI: 6.8953
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00407.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH407e-13128174354
                              HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                              + h ++Er+RR+++ ++f  L  +lP +     kK++Ka+iLe+A++++++L
  Sme2.5_00407.1_g00002.1 128 QHHIIAERKRREKLSQKFVALSAILPGL-----KKVDKASILEQAIKHVQEL 174
                              6899************************.....9***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.154125174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.35E-11128179No hitNo description
SuperFamilySSF474592.62E-16128191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-15128188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-10128174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-12131180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MDDFTSQKST ISEDQETSEA CLSPDSTNYP CHFHQEISKS KVSKIDFSLI TPIGCKRRAI  60
DHHQPELNNN KRISSSSSRF LSFNNNNMDS ILFPSCKTEA VDEMYLCDSS DDKLFPSKDK  120
RIPSADHQHH IIAERKRREK LSQKFVALSA ILPGLKKVDK ASILEQAIKH VQELKEKVQL  180
LEKEKNSRPS QEEAVMFVTK SKLEMEEENS NNNIDRDFPG DIEVRFSDNN VLIRISCARR  240
KAFVLNIHNE IEKLHLTIVQ SCMMPFGEQA IDITLVAKMD ESFCMTLKDL AKHVQMVTGR  300
LMTQP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1133138ERKRRE
2134139RKRREK
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754411e-63HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006357746.11e-144PREDICTED: transcription factor bHLH18-like
SwissprotQ9T0723e-43BH025_ARATH; Transcription factor bHLH25
TrEMBLM1D0K11e-144M1D0K1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000786961e-144(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA136021316
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.16e-38bHLH family protein