PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00388.1_g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 185aa    MW: 21370.8 Da    PI: 10.5021
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00388.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.22.4e-1964115256
                      AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56 
                              +y+GVr+++ +g+++AeIrdp   + k++r++lg++ tae+Aa a+++a+ kl+g+
  Sme2.5_00388.1_g00003.1  64 RYRGVRRRP-WGKFAAEIRDP---KrKSARVWLGTYETAEDAALAYDRAAFKLRGA 115
                              8********.**********8...5456**************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.95E-3063124No hitNo description
Gene3DG3DSA:3.30.730.104.3E-3264123IPR001471AP2/ERF domain
PROSITE profilePS5103224.94864122IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-2364123IPR016177DNA-binding domain
PfamPF008471.8E-1464114IPR001471AP2/ERF domain
SMARTSM003803.8E-3564128IPR001471AP2/ERF domain
PRINTSPR003678.6E-116576IPR001471AP2/ERF domain
PRINTSPR003678.6E-1188104IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MHQENSIDFD LSFLDSELEH QFNCSNSNSN SNSISSVDHT WEKRNENKDN ILRSSSQVSN  60
NWKRYRGVRR RPWGKFAAEI RDPKRKSARV WLGTYETAED AALAYDRAAF KLRGARAILN  120
FPHLIDSNVA ELNRVQPKRR SRSPNKEEEI PSPKRRNAQL INSLAKANSI IHLFEVNNLA  180
FHPQG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-3163128469ATERF1
3gcc_A2e-3163128469ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006345610.16e-99PREDICTED: ethylene-responsive transcription factor 13-like
TrEMBLM1AA151e-97M1AA15_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000180852e-98(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.19e-32ethylene-responsive element binding factor 13