PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00341.1_g00013.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 264aa    MW: 30752.1 Da    PI: 7.019
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00341.1_g00013.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.31.5e-1465116155
                              CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              +r++h e+Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i+  A+e++k+L+
  Sme2.5_00341.1_g00013.1  65 QRMTHIEVERNRRKQMNQHLHVLRSLMPTS---YVQRGDQASIVGGAIEFVKELE 116
                              79****************************...9******************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.75E-1263120No hitNo description
Gene3DG3DSA:4.10.280.109.1E-1463119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.81E-1764130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.2564115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.9E-1265116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.1E-1070121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MFPTIVNDDN YHSFEDVSYC HNYQEEEEEG LMVKEEEING KANEKKKKRK RRIIRMKSSE  60
EVEKQRMTHI EVERNRRKQM NQHLHVLRSL MPTSYVQRGD QASIVGGAIE FVKELEQLLQ  120
CLESQKRRKL YGDQDSLSLM EIQNPQLLFP PNNNFPLSNE NEIGIQEEKA EIKSCLAHVE  180
VKIIGIDNAM IKILSKRRPG QLINTISALQ HLQLNIIHTN VTTIEQNVLY YFNVKIYGET  240
RVSADNIANL VQQIFSFFHA NSPI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14449KKKKRK
24551KKKRKRR
34651KKRKRR
46576RMTHIEVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755219e-80HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
GenBankHG9754489e-80HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016555209.11e-133PREDICTED: transcription factor FAMA-like
SwissprotQ56YJ86e-88FAMA_ARATH; Transcription factor FAMA
TrEMBLM1CWE11e-129M1CWE1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000762231e-129(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46572341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24140.19e-74bHLH family protein