PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00326.1_g00007.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 589aa    MW: 64630 Da    PI: 6.7624
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00326.1_g00007.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.11.6e-082512861655
                              HHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH  16 iNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              i ++f +Lre++P++    ++K +Ka+ L +++eYI+ Lq
  Sme2.5_00326.1_g00007.1 251 ITEGFLKLREIIPHS----DQKRDKASFLLEVIEYIQFLQ 286
                              6789**********9....9*******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.705235285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0026241291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.08E-7251290No hitNo description
Gene3DG3DSA:4.10.280.102.6E-13251302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.5E-6251286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-10251305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 589 aa     Download sequence    Send to blast
MELPQSRPFA TEGRKTTHDF LSLYTPIEQD PRPSQGGFLK THDFLQPLDQ ASKTVGKEEN  60
KIELEATEKL PSSAEHILPG GIGTYSISYL QQRVPKPEAN IFAVTQASST DRNSNCSSYS  120
GSGFTLWNES ATKRGKTGKE NLAGDRHVVR EAGVNIGGGK PTTSLERQSQ LSSNHGHNTA  180
TLSSHSSPQQ PSAMENQNFI HMITSAKNAQ EDDDDKEEEF VVKKESPSPS RGLSCTCLIV  240
ASLSRLNLSF ITEGFLKLRE IIPHSDQKRD KASFLLEVIE YIQFLQEKVH KYEGSYQGLE  300
NKPSTLPWNK CHNMAQGFID HSQGTNNASS PALIRASKFD ENKIGISATG PVNGQTLEPS  360
RTSSVKESSL LSESTDRAAT LCMQPSTFPF CGNTSIAYAG TVELTSQPQI PLSRWNMTNH  420
AVTDDKLKDE EMSIESDTTS ISTVYSQRLM NTLKQALQSS GVDLSQANMS VQIDLAKRAN  480
DRSNALASNF KTHLKVRNKT LSLYHPSDIK SSYHIGESIT IKHIWEFLGP TPITYESVIV  540
ERSDGVAASA QYLAGEKERA SGVYNSSKSS FGTKEIFILT VQSSTTLAT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755181e-102HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004241615.10.0transcription factor BIM1 isoform X3
TrEMBLA0A1U8FB590.0A0A1U8FB59_CAPAN; transcription factor BIM1-like isoform X1
STRINGSolyc06g069370.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA39692345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.44e-65bHLH family protein