PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00311.1_g00015.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 88aa    MW: 9650.71 Da    PI: 6.5074
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00311.1_g00015.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.82.6e-081154444
                             S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
          Myb_DNA-binding  4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                             WT++  + +  a + + ++   +W+ +a+ +g ++t+k++k ++
  Sme2.5_00311.1_g00015.1 11 WTAQQNKAFEMALAVYDKDtpdRWSNVAKAVGGNKTAKDVKRHY 54
                             *******************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.098358IPR017877Myb-like domain
SMARTSM007171.4E-5760IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.8E-41056IPR009057Homeodomain-like
CDDcd001673.79E-61054No hitNo description
SuperFamilySSF466891.42E-111063IPR009057Homeodomain-like
PfamPF002493.3E-61054IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 88 aa     Download sequence    Send to blast
MSSSQAGQFT WTAQQNKAFE MALAVYDKDT PDRWSNVAKA VGGNKTAKDV KRHYEILVHD  60
IDFIETGGVP FPNYIVTNAC TGGPTNNN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-31177176RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018627251.15e-40PREDICTED: protein RADIALIS-like 1
SwissprotF4JVB84e-32RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLA0A1J6JBP43e-39A0A1J6JBP4_NICAT; Protein radialis-like 1
STRINGPGSC0003DMT4000018832e-37(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.12e-34RAD-like 1
Publications ? help Back to Top
  1. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]