PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00248.1_g00017.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 186aa    MW: 20912.5 Da    PI: 8.1845
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00248.1_g00017.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP228.73.3e-091359255
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             ++ GVr +k++ r++AeIr p      ++++lg+f+t+++  +  + a++ ++g
  Sme2.5_00248.1_g00017.1 13 CVIGVR-KKSSDRYRAEIRNP------TYVWLGTFDTPKQVPRVNDMAARMYHG 59
                             578**9.5669*********9......**********99888888888888877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103213.591367IPR001471AP2/ERF domain
SuperFamilySSF541714.05E-121468IPR016177DNA-binding domain
SMARTSM003803.0E-101673IPR001471AP2/ERF domain
CDDcd000182.60E-141667No hitNo description
Gene3DG3DSA:3.30.730.104.3E-151667IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MAMWRQLYPQ MRCVIGVRKK SSDRYRAEIR NPTYVWLGTF DTPKQVPRVN DMAARMYHGP  60
KAKTNFPPKN KDNLEKVNPM NASDVNSPSQ SSDFGSSSGS MDELTVLEEY YSEILRIGGV  120
ISRDPKPTNY IQKEMTRDFI DGSGSGSGSG NGYEVQDQLP TTNHLELSLT SLLPRQGPCE  180
IVYHIS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.17e-15erf domain protein 9