PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00240.1_g00009.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 218aa    MW: 24912.8 Da    PI: 8.6765
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00240.1_g00009.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.26e-0868113855
                              HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                               Er+RR +  + ++ L++l+P+ +   +  K++   i+ + ++YIk L+
  Sme2.5_00240.1_g00009.1  68 KERNRRGKTAEMYSLLQSLIPTiS---HIHKVTREKIVAESTDYIKRLE 113
                              6*********************99...*******************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.78260112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.5E-566118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.26E-667116No hitNo description
SuperFamilySSF474591.31E-967138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-568113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-868125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5167110.073153218IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MWQEMMIKEE AEEEEIERLF MGVMGGYRDA FMPPLTDFSA MNQMGSSSSY GCKKQRKEDP  60
MLADSIHKER NRRGKTAEMY SLLQSLIPTI SHIHKVTREK IVAESTDYIK RLEEEILRLK  120
NLKKSLLVYK PALSQCKNRV SSVNVTLSRG LAFFGIQFQL TQGLMTNIFS VLDKHHAEVL  180
AANVSVSDHR LATLAITVMI GNNDSNNVEN IRRELLLF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2434881e-113AC243488.3 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone slm-12k2 map 1, complete sequence.
GenBankAC2465881e-113AC246588.5 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-70o17 map 1, complete sequence.
GenBankHG9755131e-113HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010321200.21e-118uncharacterized protein LOC104647475
TrEMBLA0A3Q7EFT01e-114A0A3Q7EFT0_SOLLC; CASP-like protein
STRINGSolyc01g067340.1.11e-117(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA132481415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.14e-06bHLH family protein