PlantTFDB
Plant Transcription Factor Database
PlantRegMap/PlantTFDB v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00238.1_g00011.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 796aa    MW: 91161.2 Da    PI: 6.6449
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00238.1_g00011.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.50.00027136192432
                              HHHHHHHHHHHHHHHHHHHHHCTSCC.C............................. CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPk.as...........................k 32 
                              + n+ E+r+R ++ + f   r+ lP+ ++                           k
  Sme2.5_00238.1_g00011.1 136 KTNILEQRYRINVGELFGHVRKKLPWaDPkvvkevvdlelykllgertaadnekpvK 192
                              45************************5556666666666666666666555554444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045583.4E-558164IPR007639Glutaminyl-tRNA synthetase, class Ib, non-specific RNA-binding domain, N-terminal
PfamPF045577.0E-14167263IPR007638Glutaminyl-tRNA synthetase, class Ib, non-specific RNA-binding domain 2
Gene3DG3DSA:3.40.50.6209.7E-39270339IPR014729Rossmann-like alpha/beta/alpha sandwich fold
SuperFamilySSF523747.04E-84270578No hitNo description
PfamPF007498.4E-115270569IPR020058Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain
CDDcd008077.87E-139270574No hitNo description
TIGRFAMsTIGR004401.3E-184271793IPR004514Glutamine-tRNA synthetase
PRINTSPR009874.7E-7274286IPR000924Glutamyl/glutaminyl-tRNA synthetase
PROSITE patternPS001780277288IPR001412Aminoacyl-tRNA synthetase, class I, conserved site
PRINTSPR009874.7E-7303316IPR000924Glutamyl/glutaminyl-tRNA synthetase
Gene3DG3DSA:3.90.800.107.3E-36343441No hitNo description
PRINTSPR009874.7E-7442452IPR000924Glutamyl/glutaminyl-tRNA synthetase
Gene3DG3DSA:3.40.50.6209.7E-39444493IPR014729Rossmann-like alpha/beta/alpha sandwich fold
Gene3DG3DSA:1.10.1160.104.0E-31494571IPR020061Glutamyl/glutaminyl-tRNA synthetase, class Ib, alpha-bundle domain
PfamPF039501.4E-40572771IPR020059Glutamyl/glutaminyl-tRNA synthetase, class Ib, anti-codon binding domain
SuperFamilySSF507151.36E-54572789IPR011035Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain
Gene3DG3DSA:2.40.240.108.0E-30580698IPR020056Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain
Gene3DG3DSA:2.40.240.101.4E-27699789IPR020056Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006425Biological Processglutaminyl-tRNA aminoacylation
GO:0048481Biological Processplant ovule development
GO:0005737Cellular Componentcytoplasm
GO:0004819Molecular Functionglutamine-tRNA ligase activity
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 796 aa     Download sequence    Send to blast
MVKEDSNVLD LFLKIGLDER TAKNTLANNK VTTNLTAVIN EAAVTDGCDR AVGNLLYTVA  60
TKFPANALNH RPTLLQYIVS TKIKTPAQIE AAFAFLAATA SENLKVPDFE EACGVGVEVS  120
KDEIERAVSE VFEEKKTNIL EQRYRINVGE LFGHVRKKLP WADPKVVKEV VDLELYKLLG  180
ERTAADNEKP VKKKKEKPAK TEVVLHEKAK VEETSAPKQS EEELNPYLIF PAPEENYKVH  240
TEVYFSDRPV LRACNSKELL EKHLKVTGGK VRTRFPPEPN GFLHIGHAKA MFVDFGLAKE  300
RGGGCYLRFD DTNPEAEKKE YIDHIKEIVG WMGWEPFKIT YTSDYFQDLY ELAVELIRRG  360
HAYVDHQTAD EVKEYREKKM NSPWRDRPVE ESLRLFDEMK KGMIDEGKAT LRMKQDMQND  420
NFNMYDLIAY RIKARDKWCI YPSYDYAHCI VDSLENITHS LCTLEFETRR ASYYWLLDAL  480
SLYQPFVWEY SRLNVSNTVM SKRKLNRLVT ENWVDGWDDP RLMTLAGLRR RGVTSTAINA  540
FVRGIGITRS DSSMIQLSRL EYHIREELNK TAPRTMVVLN PLKVIITNLE AGLVMDLDAK  600
KWPEAPADDT SSFYKVPFSR VVYIERTDFR MKDSKDYYGL APGKSVLLRY AYPIKCTDVI  660
LADDKETVLE IRAEYDPSKT IKPKFPETVK LQGVLHWVAE PSPGVDPLKV EVRLFDRLFR  720
SENPVELDDW LGDLNSESKV VIQNAYAVPS VSKAALGDGF QFERLGYFAV DKDSTSEKLV  780
FNRTVTLRDT YAKGGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4r3z_C0.0979331798Glutamine--tRNA ligase
4ye6_A0.097938775Glutamine--tRNA ligase
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754446e-99HG975444.1 Solanum pennellii chromosome ch05, complete genome.
GenBankHG9755176e-99HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010320758.10.0glutamine--tRNA ligase isoform X1
SwissprotP527800.0SYQ_LUPLU; Glutamine--tRNA ligase
TrEMBLA0A3Q7GEE90.0A0A3Q7GEE9_SOLLC; Uncharacterized protein
STRINGSolyc05g009220.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA69741213