PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00211.1_g00016.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family G2-like
Protein Properties Length: 175aa    MW: 19769.4 Da    PI: 10.2783
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00211.1_g00016.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like103.71.1e-3249102255
                  G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                              pr+rWt+ LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  Sme2.5_00211.1_g00016.1  49 PRMRWTTSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 102
                              9****************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.84E-1646103IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.5E-2947102IPR009057Homeodomain-like
TIGRFAMsTIGR015576.1E-2449102IPR006447Myb domain, plants
PfamPF002495.5E-850101IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MVANRFHNQH QHSQYYNGVG LGSPSSHENS LMRSRFLPKF PAKRSMRAPR MRWTTSLHAR  60
FVHAVELLGG HERATPKSVL ELMDVKDLTL AHVKSHLQMY RTVKTTDKSA ASSGQSDGSG  120
EEDLLAIDRI LDQRGPSDGC DDPSTTLWSN SSSRKLEQSP ISKKKLRREL YLLEL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A5e-1850104458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B5e-1850104458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A5e-1850104357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B5e-1850104357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C5e-1850104357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D5e-1850104357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A5e-1850104458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C5e-1850104458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D5e-1850104458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F5e-1850104458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H5e-1850104458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J5e-1850104458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269|PubMed:11525739, ECO:0000269|PubMed:15286295, ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:17307928}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2395832e-52AC239583.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 5 clone C05HBa0201O22, complete sequence.
GenBankHG9754442e-52HG975444.1 Solanum pennellii chromosome ch05, complete genome.
GenBankHG9755172e-52HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006345507.16e-99PREDICTED: transcription repressor KAN1-like isoform X2
SwissprotQ9C6162e-53KAN2_ARATH; Probable transcription factor KAN2
TrEMBLM1A9V11e-97M1A9V1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000179812e-97(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24682355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32240.19e-49G2-like family protein
Publications ? help Back to Top
  1. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]