PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00211.1_g00009.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 231aa    MW: 26487.4 Da    PI: 6.1027
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00211.1_g00009.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.15.2e-19103153255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              +y GVr ++ +g++++eIrd + ng   r++lg+f+taeeAa a+++a+++++g
  Sme2.5_00211.1_g00009.1 103 HYIGVRKRP-WGKYASEIRDSTRNG--IRVWLGTFDTAEEAALAYDQAALSMRG 153
                              799******.**********44465..*************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.24E-28102162No hitNo description
Gene3DG3DSA:3.30.730.101.2E-28103162IPR001471AP2/ERF domain
SMARTSM003802.4E-33103167IPR001471AP2/ERF domain
PROSITE profilePS5103221.456103161IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-22103163IPR016177DNA-binding domain
PfamPF008476.6E-13103153IPR001471AP2/ERF domain
PRINTSPR003678.0E-10104115IPR001471AP2/ERF domain
PRINTSPR003678.0E-10127143IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MSSNSIPLEI DTSFAHSNFF FFQNESPPTT PWNSDDLFFN DPFVEEYDHQ DSPIINIPCE  60
NDHQEVVESS NTTTTTTSKA SGQNSHHDQE KVTSQEKKQE EKHYIGVRKR PWGKYASEIR  120
DSTRNGIRVW LGTFDTAEEA ALAYDQAALS MRGPWSLLNF PIEQVKKSLE KIEYSCKDGL  180
SPAAVLKATH KTRRVKHKRR RRKNNNKNVE NVLVFEDLGV ELLEELLINS S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-28102162161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1197202KRRRRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0442361e-165AY044236.1 Lycopersicon esculentum ethylene-responsive factor 1 (ERF1) mRNA, complete cds.
GenBankEU3956341e-165EU395634.1 Solanum lycopersicum ethylene response factor (ERF1) gene, promoter region and complete cds.
GenBankHG9755171e-165HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006360378.11e-116PREDICTED: ethylene-responsive transcription factor 1B-like
SwissprotA0A3Q7I5Y98e-50ERFC3_SOLLC; Ethylene-response factor C3
TrEMBLM1B5Y71e-115M1B5Y7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000378261e-115(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.13e-30ethylene response factor 1
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Pirrello J, et al.
    Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene.
    BMC Plant Biol., 2012. 12: p. 190
    [PMID:23057995]
  3. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]