PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00203.1_g00006.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family AP2
Protein Properties Length: 490aa    MW: 54434.9 Da    PI: 6.516
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00203.1_g00006.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.46.2e-17156205155
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                              s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Sme2.5_00203.1_g00006.1 156 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 205
                              78*******************......55************************997 PP

2AP241.24.2e-13248298155
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ k +g
  Sme2.5_00203.1_g00006.1 248 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAAIKCNG 298
                              89********.7******5553..2.26**********99**********99776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.02E-16156214IPR016177DNA-binding domain
PfamPF008475.6E-9156205IPR001471AP2/ERF domain
CDDcd000181.79E-11157215No hitNo description
PROSITE profilePS5103217.794157213IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-17157214IPR001471AP2/ERF domain
SMARTSM003801.3E-32157219IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-17248307IPR016177DNA-binding domain
CDDcd000181.25E-25248308No hitNo description
PfamPF008471.3E-8248298IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.9E-16249306IPR001471AP2/ERF domain
PROSITE profilePS5103215.527249306IPR001471AP2/ERF domain
SMARTSM003804.9E-32249312IPR001471AP2/ERF domain
PRINTSPR003675.3E-6250261IPR001471AP2/ERF domain
PRINTSPR003675.3E-6288308IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MMLDLNLSAI YDEKVQEGSV VDESGSSNSS ARNVEGCSSA GDDETCSTRA AAGEMFAFNF  60
DILKVGGAET SRSCSNNDDE EGYDENRTTR SEYVTQQLFP MDNAELNRIH ISRRPDPSQD  120
PPNTVSFREV QQMVRPQQQQ QQPVKKSRRG PRSRSSQYRG VTFYRRTGRW ESHIWDCGKQ  180
VYLGGFDTAH AAARAYDRAA IKFRGVDADI NFNLSDYEED MKQMKNLSKE EFVHALRRQS  240
TGFSRGSSKY RGVTLHKCGR WEARMGQFLG KKYIYLGLFD SEVEAARAYD KAAIKCNGRE  300
AVTNFEPSAY EGETNSNPHS EGSQQDLDLN LGIATSSPKD IERSSGFQYH PYDMQEATKS  360
QMDKSGSPIV GSSHFKALPA VTSEQAHLWN GVYSNFFPNY EERASGKRID VGTSHGHPNW  420
AMQMHGQVGT TPMPMFSAAA SSGFSTPATT ASASPMSGPN TLDLSFASYS TPSANTTQYY  480
YQIRPPLPPP
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with IDS1, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). Regulates the transition from spikelet meristem to floral meristem, spikelet meristem determinancy and the floral organ development (PubMed:17144896). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:17144896, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:20017947, ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5869530.0HQ586953.1 Solanum lycopersicum AP2 transcription factor SlAP2d mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015059028.10.0ethylene-responsive transcription factor RAP2-7 isoform X1
SwissprotQ8H4431e-109AP23_ORYSJ; APETALA2-like protein 3
TrEMBLM1CDR50.0M1CDR5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000653130.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59124116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-110related to AP2.7
Publications ? help Back to Top
  1. Lee DY,An G
    Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice.
    Plant J., 2012. 69(3): p. 445-61
    [PMID:22003982]
  2. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  3. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]