PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00192.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 331aa    MW: 37650.8 Da    PI: 5.4194
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00192.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.61.3e-14129180155
                              CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              +r +h ++Er+RR+++N+ ++ Lr+l+P++     ++ + a+i+  A++Y+k+L+
  Sme2.5_00192.1_g00002.1 129 QRITHIAVERNRRKQMNDYLSILRSLMPQS---FVQRGDQASIVSGAINYVKELE 180
                              799**************************9...9******************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.23E-14127184No hitNo description
SuperFamilySSF474597.33E-17128196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.491128179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.9E-14128184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.1E-12129180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.9E-12134185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MALEAITQQQ QYLYALLGTT NWGSGSGSDY YNNEAFDGFL ANNQNASAPQ EYEDYSNWNL  60
PPPLLVDSQN EYHQWCQNSS SVLDHNFAIP NGQEQQPHLD SPAEMSSSTT RPRRRRTRTK  120
KNNEEIENQR ITHIAVERNR RKQMNDYLSI LRSLMPQSFV QRGDQASIVS GAINYVKELE  180
QQLQFLCGQK HLNSQNQESN GETSPFSEFF SIPQYSTTMS AAATTSENGA CENEYYRNQK  240
LPATADIEVT MVENHANLKI RSKRRPRLLP RIISGLESLR LNVLHLNVST VDQFVLCSLS  300
LKVEEDCKMS SVEEIAAVVN QILIRIHEEA N
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110117RPRRRRTR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006361869.10.0PREDICTED: transcription factor bHLH94-like
TrEMBLM1CS960.0M1CS96_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000735740.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA132271518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.12e-70bHLH family protein