PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00190.1_g00012.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 301aa    MW: 33611.9 Da    PI: 6.7039
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00190.1_g00012.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.52.8e-14104150354
                              HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                              ++h+e+ErrRR+riN+ +++Lr+llP+      +K +Ka+ L ++++++k+L
  Sme2.5_00190.1_g00012.1 104 KSHSEAERRRRERINNHLAKLRSLLPNT-----TKTDKASLLAEVIQHVKEL 150
                              79*************************9.....8****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.136101150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-11104150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.67E-15105156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-15105171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-13107156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.98E-5114153No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MLPWSIPPVQ PFMNPVHHHD PFLLPPSPSP YGLFNRRPQF GYEGPSGTTT DHHQLRFISD  60
SLVGQVVHHH HHQPGSVAPF GLQAELQKMT AQEIMDAKAL AASKSHSEAE RRRRERINNH  120
LAKLRSLLPN TTKTDKASLL AEVIQHVKEL KRQTSLIAET SVVPTEIDEL TVDNATSDED  180
GKFLIKASLC CEDRSDLLPD LIKTLKALRL KTLKAEITTL GGRVRNVLFI TGDDYYSNNR  240
DNLDSSSNGD DDDCEMMQQQ PQYCISSIQE ALKAVMEKSS GDDSASTSVK RQRTNNINIL  300
S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1109114ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754441e-125HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006362528.10.0PREDICTED: transcription factor bHLH30
SwissprotQ9S7Y13e-99BH030_ARATH; Transcription factor bHLH30
TrEMBLM0ZJQ70.0M0ZJQ7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000021540.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40832444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.11e-80bHLH family protein