PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00186.1_g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 138aa    MW: 15696.3 Da    PI: 5.2193
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00186.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.12.1e-104072136
                             CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS CS
                      HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapsk 36
                             ++ +hn+ Er RR++iN  ++ Lr+llP +   +++
  Sme2.5_00186.1_g00003.1 40 KKLNHNASERDRRKKINGLYSSLRSLLPAS---DHT 72
                             6789************************97...555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.45E-83270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.6333988IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.5E-84073IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.40E-74067No hitNo description
Gene3DG3DSA:4.10.280.101.1E-84070IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MESLHSSSSS QKSLQHSDSN KFDQININGG DHHQPDQTIK KLNHNASERD RRKKINGLYS  60
SLRSLLPASD HTINNGSIDE AISQLEDEGL VLLNASSFET FEDRLFYTLH FQVEGAMVVE  120
VDMLRDKLSS YFEKEDKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755222e-67HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006351394.11e-38PREDICTED: transcription factor ORG2-like
TrEMBLM1CXD31e-38M1CXD3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000767752e-39(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22262256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.13e-14bHLH family protein