PlantTFDB
Plant Transcription Factor Database
PlantRegMap/PlantTFDB v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00179.1_g00023.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 585aa    MW: 63762.3 Da    PI: 6.2368
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00179.1_g00023.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.51.5e-10295340655
                              HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              +++Er RR ri  ++ +L++l+P+     +k  s a++L +Av++I+ Lq
  Sme2.5_00179.1_g00023.1 295 SIAERERRTRISGKLKKLQDLVPNM----DKQTSYADMLDLAVQHIRTLQ 340
                              689*********************7....688*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.954289339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.93E-13292345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.24E-11293344No hitNo description
Gene3DG3DSA:4.10.280.101.1E-11294344IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.4E-8295340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-12295345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF525401.61E-11456560IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009318.9E-19456559IPR002182NB-ARC
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0005829Cellular Componentcytosol
GO:0043531Molecular FunctionADP binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 585 aa     Download sequence    Send to blast
MYPSSTSSSS QTSMSHSSNT AGGGGSLTRY GSAPGSFLTT AVESVVNGNH EFASHGSHHS  60
HLGPSRYFPS NLASTSLNSE STSKPKEQSN LQRSIGFNDL TIGGGAVSGG GDGGALPATS  120
TTPLVRHSSS PARFLNQLAT AAGDTGFSVS MGRGSYNSKG GGDSGRGITR LNSQLSFTRQ  180
EALSQIAEEN EDIEGASIDN GHRKSTHSYA SASSFAMGSW EDNNSIMFSV TPSKRAKHIS  240
NDIVNGLDDG ETQFQFGLSQ TALEMASMDR LLHIPEDSVP CKIRAKRGCA THPRSIAERE  300
RRTRISGKLK KLQDLVPNMD KQTSYADMLD LAVQHIRTLQ DQVQGRTINL AYEAEVSTDS  360
ILAQYNVFWH IFCSLPINIK EIKQINAEVT EMCEVALMPC YELSPCKHLT TRHSNSLSDE  420
EIVGFEIATE KLVQYLTRGT SELDVIPIGM GGQGMAWDDL RLSFPDVGNR SRIVVTTRLE  480
KVGEQVKYHT DPHSLPFLTT DESCQLLQKK VFQKEDCPRE LRDVSQAVAG LPLVVVLVAG  540
TIKKWKTEES WWNEVKDALF DCLDPESEEY CRANIVLIVS QKNAV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6s2p_N3e-11456546127226NRC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU5301531e-148KU530153.1 Solanum demissum R8 gene cluster, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015087286.10.0transcription factor bHLH128-like isoform X1
TrEMBLM1A8580.0M1A858_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000167930.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA64552328
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.12e-70bHLH family protein