PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00169.1_g00018.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 706aa    MW: 77634.2 Da    PI: 9.4333
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00169.1_g00018.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.51.6e-10524570354
                              HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                              ++h+e+ErrRR+riNs ++ Lr+ll  +      K +Ka+ L k+v+ +++L
  Sme2.5_00169.1_g00018.1 524 KNHKEAERRRRERINSHLHSLRTLLSCN-----SKTDKASLLAKVVQRVREL 570
                              79***********************997.....7************998887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR009464.7E-1391494IPR014024Auxin efflux carrier, plant type
PfamPF035475.4E-1479494IPR004776Membrane transport protein
PROSITE profilePS5088815.046521570IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.8E-12522585IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-11523583IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.2E-8524570IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.4E-10527576IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055085Biological Processtransmembrane transport
GO:0016021Cellular Componentintegral component of membrane
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 706 aa     Download sequence    Send to blast
MISLSDLYHV LTAVVPLYVA MILAYGSVKW WKIFSPDQCS GINRFVALFA VPLLSFHFIA  60
SNNPYAMNYR FIAADTLQKI IVLFVLAIWS RVSSRGSLEW SITLFSLSTL PNTLVMGIPL  120
LKGMYGDASG SLMVQIVVLQ CIIWYTLMLF LFEYRGARML IAEQFPDTGG NPTPRGSSFN  180
HTDFYSMVNG KNANMSPRHS NFGNYGHDEE SGVAGYGRGN GVYGPGNAGY PAPTNAGIFS  240
PATGPITKKK ANGGSEAGKD LHMFVWSSSA SPVSEGGIHV FRGGGDYGNE LSIGAHPKDY  300
DEFGREEFTF GNKQNLNGND REGPVVRSSS TTELRPKIAQ EETKPTSMPP ASVMTRLILI  360
MVWRKLIRNP NTYSSLIGLT WSLISFKWNV QMPAIIAKSI SILSDAGLGM AMFSLGLFMA  420
LSPRIIACGK TIAIFSMGVR FLTGPAVMAA ASIAVGLRGV LLHIAIVQAA LPQGIVPFVF  480
AKEYGVHPDI LSTGSSPFYP HGHHHVEFQE TVQSIDNTPE GRAKNHKEAE RRRRERINSH  540
LHSLRTLLSC NSKTDKASLL AKVVQRVREL KDETSKIMQS ETNLFPSETD EITVLSSNDW  600
LADGRLLIKA SLCCEDRFDL IPDLIETLKS LGLSPIRAEM VTLGGRIRNV IILAADHKES  660
NNNNTDDESS LLILRDALRS IVQRSSYGTG ERGKRRRVLR QGTTNY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1521533RAKNHKEAERRRR
2529534ERRRRE
3693697KRRRV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ1270750.0HQ127075.1 Solanum lycopersicum auxin efflux facilitator SlPIN9 mRNA, complete cds.
GenBankAB5089310.0AB508931.1 Solanum lycopersicum SlPIN1 mRNA for auxin efflux carrier, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016543955.10.0PREDICTED: probable auxin efflux carrier component 1b
SwissprotQ67UL30.0PIN1C_ORYSJ; Probable auxin efflux carrier component 1c
TrEMBLD6RT090.0D6RT09_SOLLC; Auxin efflux carrier component
STRINGSolyc10g078370.1.10.0(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.14e-53bHLH family protein