PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00165.1_g00011.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 228aa    MW: 24462.5 Da    PI: 9.7009
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00165.1_g00011.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.31.2e-202372255
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             +y+GVr ++ +gr++AeIrdp   gk+ r++lg+f+taeeAaka++aa++ ++g
  Sme2.5_00165.1_g00011.1 23 HYRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAAKAYDAAARDFRG 72
                             69*******.**********8...557**********************99988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.5E-142372IPR001471AP2/ERF domain
SMARTSM003808.2E-402386IPR001471AP2/ERF domain
CDDcd000187.89E-192380No hitNo description
PROSITE profilePS5103223.9862380IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-222381IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.5E-322380IPR001471AP2/ERF domain
PRINTSPR003672.4E-112435IPR001471AP2/ERF domain
PRINTSPR003672.4E-114662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MAVKDKAVKR GNVKVNNGGK EIHYRGVRKR PWGRYAAEIR DPGKKSRVWL GTFDTAEEAA  60
KAYDAAARDF RGPKAKTNFP FPSENNNNIS NNNNNQSPCH SSTVESSSGE TGVHAPHAPA  120
EIDLTRRLGA VVAEGAGRAG FPVFHQQPTV AVLPNGQPVL LFDSMWRPGV VSRPKMPYQV  180
APVAMEFAGV SAGVVSSVSD SSSVVEENQC VGKKGLDLDL NLAPPMEV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-212381564ATERF1
3gcc_A3e-212381564ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00623PBMTransfer from PK19363.1Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly and quickly induced by ethylene. {ECO:0000269|PubMed:10945353}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006367798.11e-115PREDICTED: ethylene-responsive transcription factor 4-like
SwissprotQ9LW491e-108ERF4_NICSY; Ethylene-responsive transcription factor 4
TrEMBLM1CJQ81e-114M1CJQ8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000689591e-115(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.11e-28erf domain protein 9