PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00130.1_g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 454aa    MW: 51860.7 Da    PI: 6.2471
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00130.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.81.6e-12274318554
                              HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                              h e+Er+RR+++N++f  Lr+++P        K++Ka+ L  Av YI++L
  Sme2.5_00130.1_g00003.1 274 HVEAERKRREKLNHRFYALRSVVPYV-----SKMNKASLLGDAVTYINEL 318
                              889**********************6.....5***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.8E-4516186IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474592.36E-17267335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.929269318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.67E-13274323No hitNo description
PfamPF000104.6E-10274318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.0E-16274331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.4E-15275324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MENLSSNSSP SQPISLQKIL QYIIYNHQEW WVYGIFWQAS KDVNNRLILS WGDGHFRGIK  60
DTDSVKTYHG GGQYHQLQKK FGFDVISNNN TNNNVTDLEW FYMVSMPQCF MAEDDLIVRA  120
YASATHVWLA SYYELQLYSC ERAKEANLHG IRTIVCISTP IGVVELGSSD IIQENWEFVQ  180
FIKSLFGSDN NMNMTSPLPI NQVTFGDHQR VVKGGSPNQE EDIQIKQEMT IGNILSESGN  240
SEFENDDSSM INNVVNRSIK QRKKTSSSNA IVIHVEAERK RREKLNHRFY ALRSVVPYVS  300
KMNKASLLGD AVTYINELKA KIKTLESKLI EPQKKHILME QHDSQSASSV VTDGANNKAL  360
FSSSCYKRAR NELEIDVEIV GSEGIIRVQS LDVNYPCTRL MNAMREMEFQ IYHASFYSVK  420
DLMLQDVVIR VPEEFSNEEM LKSAIITKLS VNEN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A3e-26151868192Transcription factor MYC3
4rqw_B3e-26151868192Transcription factor MYC3
4rs9_A3e-26151868192Transcription factor MYC3
4yz6_A3e-26151868192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1261281RKKTSSSNAIVIHVEAERKRR
2277282ERKRRE
3278283RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015084073.20.0transcription factor bHLH14-like
TrEMBLM1A5990.0M1A599_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000150170.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10722185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.13e-65bHLH family protein