PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00121.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family AP2
Protein Properties Length: 337aa    MW: 38256.9 Da    PI: 10.3631
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00121.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.51.8e-19105154154
                      AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkle 54 
                              ++ykGVr++  +g+W++eIrd    n  ++r +lg+f+taeeAa a+++a+ +++
  Sme2.5_00121.1_g00002.1 105 KKYKGVRQRT-WGKWASEIRDtK--N--KTRLWLGTFDTAEEAALAYDKAAIEIR 154
                              59*****999.**********33..3..4**********************9987 PP

2AP261.61.8e-19254304256
                      AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                              +y+GVr++k +g+W+AeIrd      k++r +lg+f+ta eAa a+++a+ +++g+
  Sme2.5_00121.1_g00002.1 254 KYRGVRRRK-WGKWAAEIRDtR----KKTRLWLGTFDTALEAALAYDKAAIEIRGA 304
                              8*****998.**********33....36*************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.01E-27105154No hitNo description
SMARTSM003801.5E-27106171IPR001471AP2/ERF domain
PfamPF008472.6E-13106155IPR001471AP2/ERF domain
SuperFamilySSF541714.51E-18106155IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.3E-26106154IPR001471AP2/ERF domain
PROSITE profilePS5103219.888106163IPR001471AP2/ERF domain
PRINTSPR003678.6E-11107118IPR001471AP2/ERF domain
PRINTSPR003678.6E-11129145IPR001471AP2/ERF domain
SMARTSM003802.1E-33254317IPR001471AP2/ERF domain
PROSITE profilePS5103222.036254311IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-20254310IPR016177DNA-binding domain
CDDcd000185.91E-30254309No hitNo description
PfamPF008471.7E-14254303IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-28254309IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MASKDELKEN KVVEKPSEIE RVEKSTNQVG ESSVVLPRVV RIYMPDSDAT DSSGDEEEKL  60
QGEKSNRHER TCIKEIIIEN GKTRVISKKT SKEKKDIKLL QENVKKYKGV RQRTWGKWAS  120
EIRDTKNKTR LWLGTFDTAE EAALAYDKAA IEIRALVSKE ELQGKEGVKK GSTIDVVEKS  180
SNQAGEISQV FPRLVCIHAP DHDTTDSSSD EEKSKGHGRT CVKEIIIKNG KTKVISKKSK  240
EKKDLNLMHE DVNKYRGVRR RKWGKWAAEI RDTRKKTRLW LGTFDTALEA ALAYDKAAIE  300
IRGANALTNI LKPPPKKNNP IKINFIVPPL KRKKADR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-181063101371Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
GenBankHG9755130.0HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015064279.10.0ethylene-responsive transcription factor CRF2-like isoform X1
RefseqXP_015064286.10.0ethylene-responsive transcription factor CRF2-like isoform X1
RefseqXP_015064295.10.0ethylene-responsive transcription factor CRF2-like isoform X2
RefseqXP_015064302.10.0ethylene-responsive transcription factor CRF2-like isoform X2
SwissprotQ9SUE34e-26CRF4_ARATH; Ethylene-responsive transcription factor CRF4
TrEMBLA0A2G2XP490.0A0A2G2XP49_CAPBA; Uncharacterized protein
TrEMBLM1C2N10.0M1C2N1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000584420.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11140.13e-17cytokinin response factor 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zwack PJ,Compton MA,Adams CI,Rashotte AM
    Cytokinin response factor 4 (CRF4) is induced by cold and involved in freezing tolerance.
    Plant Cell Rep., 2016. 35(3): p. 573-84
    [PMID:26650835]
  3. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]