PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00121.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 153aa    MW: 17973.5 Da    PI: 10.4548
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00121.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.71.2e-1791141155
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              ++y+GVr++k +g+WvAeIrd +   k++r +lg+f++ eeA  a+++   +++g
  Sme2.5_00121.1_g00001.1  91 KKYRGVRQRK-WGKWVAEIRDSR---KNARLWLGTFDSSEEATLAYDKTTIEIRG 141
                              59*******9.**********43...36*******************98777765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.52E-2791147No hitNo description
SuperFamilySSF541713.2E-1992148IPR016177DNA-binding domain
SMARTSM003801.3E-2692153IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.1E-2692147IPR001471AP2/ERF domain
PfamPF008475.3E-1492141IPR001471AP2/ERF domain
PROSITE profilePS5103220.82492152IPR001471AP2/ERF domain
PRINTSPR003674.7E-1093104IPR001471AP2/ERF domain
PRINTSPR003674.7E-10115131IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MHRNHYQEWK DQGHFKGDNP VLTNFLHKTT CIEITIKNGK TKATSKAISS KEKKDNKMLQ  60
ENVKKYREKK DNKMLQENGE ERHKDAPKYV KKYRGVRQRK WGKWVAEIRD SRKNARLWLG  120
TFDSSEEATL AYDKTTIEIR GIDALTNIIN PPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-1891148462ATERF1
3gcc_A1e-1891148462ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025885736.15e-33ethylene-responsive transcription factor ERF069-like
TrEMBLM1DM951e-35M1DM95_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000912852e-36(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33710.19e-23ERF family protein