PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00114.1_g00007.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 366aa    MW: 41202 Da    PI: 5.4551
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00114.1_g00007.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.81.9e-13163210254
                              HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                               ++h + Er+RR ++N++f+ Lr ++P++      K++ a+i++  ++YI++L
  Sme2.5_00114.1_g00007.1 163 ETKHFATERQRRVHLNDKFQALRNMVPNP-----SKNDRASIVKDGIDYINEL 210
                              689*************************9.....7***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.583161210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.06E-14161227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.70E-11162212No hitNo description
PfamPF000104.4E-11163210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.8E-14164223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.8E-8167216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MYVEESACFD PATHVQHEGL AEDVFAIQEH TYHNNSNNSS QQDVAAAAAA LEMEFQQQLN  60
LEMEQCDIDG GGGAPTSSAL YDPSLVLPLN LPPQPPLLRE LFHSFPHGYG LRNLRSNNNT  120
TSFFNGLEER DQGLYQDNGE TRPFDSGIFE FSAVAKNRDG IKETKHFATE RQRRVHLNDK  180
FQALRNMVPN PSKNDRASIV KDGIDYINEL KRGVNELKLM VEKKRCSRDR IKKQKTESGT  240
TCVDGTDAKQ IMDEVEQSYN GNSLRSSWLQ RRSKNTEVDV RIVDDEVTVK LVQQKRINCL  300
FFASKVLDEL QLDLHHVAGG LIGDYYSFLF NSKISEGSTV YASAIAKKLI EVVDIQYAAI  360
APTNSY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006354586.10.0PREDICTED: transcription factor bHLH91-like
TrEMBLM0ZNJ41e-180M0ZNJ4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000044970.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26962351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31210.13e-84bHLH family protein