PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00114.1_g00006.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 392aa    MW: 44408 Da    PI: 6.4658
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00114.1_g00006.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.61.7e-11200246354
                              HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                              ++h++ E++RR +  ++f+ Lr+l+P++      K++ a+i   A+ YI++L
  Sme2.5_00114.1_g00006.1 200 VKHPASEKQRRVHFSDKFQALRTLIPNP-----SKNERASIIADAIVYINEL 246
                              68*************************9.....7***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.446197246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.70E-10200247No hitNo description
PfamPF000105.9E-9200246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-12200266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.9E-13201268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.7E-7203252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MYASESLSFD PTSSQQDEKG FLQNHIATTS NTSFPMELQQ QQLNLGESSN LNMQIEFGHE  60
PNNTRFHPNW EEIGLNPYNN QQLSYPISSS SSLGLLAGFH QRTDHQLAST STNLFYEPPQ  120
LYMPLNLCTP QSSLFKELFH LPPHGSSYGL GSSWTGSLFS HGHDQEEAIG SLYHDGSFHE  180
FTGDMMNSAA IKKRELGKDV KHPASEKQRR VHFSDKFQAL RTLIPNPSKN ERASIIADAI  240
VYINELKMRV NELKIQVDIK KKRIKRQRTI VEEDGAVIME AEDDINKSIH CHHQRKSSKN  300
SSTEVDVRIM GEEVIVKLVQ HKKIIKKMNC LVFVSKAFDD LQLDLQHVAG GLIGDQYSYL  360
FNSKICEGCT VYASEVANKV IEVLDKEHED IN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015087359.10.0transcription factor bHLH91-like
TrEMBLM1DCN20.0M1DCN2_SOLTU; Uncharacterized protein
STRINGSolyc01g081090.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26962351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31210.16e-47bHLH family protein