PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00081.1_g00022.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 460aa    MW: 51171.4 Da    PI: 6.4416
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00081.1_g00022.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.43e-09301348455
                              HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Sme2.5_00081.1_g00022.1 301 SHSLAERVRREKISQRMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 348
                              8*************************9....677*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.66E-10295352No hitNo description
SuperFamilySSF474599.42E-17295366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-16297365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.396297347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-6301348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.1E-10303353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MDNDYFSNGG IQPPFHFDPK TPLNSLHSPP QPNSDYFLNT HFDSELISIV SSPNTVDSSS  60
SLCELIGKLG SICSSPLAPF TNSSSNNMTD STRTSCYTTP MNSPPKLMNQ MGKDRLPNLG  120
DSVLLNSPPI SGAKFSRFGS RSFNGRTSQF ELNNEESRYG SGAGVVGRGN LTRILSSPSL  180
VQNMMCERLN LSKISGHNEE CSVSEQDPSG EMGSKTRNVL NLRKRKAVKS KNFVPIVDET  240
EDGRGKRRAK STEGNGSVKT EEQKGSENEE AEKEEMENQK IAEPPKDYIH VRARRGQATD  300
SHSLAERVRR EKISQRMKLL QDLVPGCNKV TGKALMLDEI INYVQSLQRQ VEFLSMKLAS  360
VNPRMDVHID NLLHKEICQP NVSLHQHVYP ADGYGENLTQ LPTVCEDDLQ SIVQMGFIQN  420
PNQDLMLQSL GFIQNSNQDL MLQSQTFPVP NSDSHMKIEM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006352666.10.0PREDICTED: transcription factor bHLH62
TrEMBLM1BSK90.0M1BSK9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000519800.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10572383
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.13e-66bHLH family protein