PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00076.1_g00015.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family E2F/DP
Protein Properties Length: 455aa    MW: 50074.8 Da    PI: 4.454
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00076.1_g00015.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP855.8e-27125190171
                  E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                              r+++sL+llt+kf++l++++e+g+++ln++a++L   +v  ++RRiYDi+NVLe+++liekk kn i+wkg
  Sme2.5_00076.1_g00015.1 125 RYDSSLGLLTKKFINLIKHAEDGVLDLNKAADTL---EV--QKRRIYDITNVLEGIGLIEKKLKNMIQWKG 190
                              6899******************************...99..****************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.7E-29123192IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013726.3E-35125190IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467853.26E-17125188IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023192.1E-24127190IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF1440742.88E-31217318No hitNo description
CDDcd146602.84E-44217318No hitNo description
PfamPF164215.1E-32219316IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009733Biological Processresponse to auxin
GO:0010090Biological Processtrichome morphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051302Biological Processregulation of cell division
GO:0051446Biological Processpositive regulation of meiotic cell cycle
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MQPNQQQLSK RQLPFTSSKP PLGDYHRFST DPLHLPSQQP EGITVKSSPL KRKSETANDE  60
QGVGAHQVAG SGSANMSSPM QTPISGKAGK SQKAPRTSRS RSTAQATSSL GSPSGNNVTP  120
VGPCRYDSSL GLLTKKFINL IKHAEDGVLD LNKAADTLEV QKRRIYDITN VLEGIGLIEK  180
KLKNMIQWKG LDVSRPGEVD ESVTSLQGFN NSFVLPLHAG VENLMMQESR LDEQIREMQE  240
KLRDLSEDEN NQRCLFVTEY DIKSLPCLQN DTLIAIKAPH GTTLEVPDPD EAVDYPQRRY  300
RIVLRSTMGP IDVYLVSQFE EKFEEMNTVE EPSTMPSTSG FVESETATLP VDDDGGVGVR  360
MEEQENQREC PDAGTSQDPL SGIMKIVPYV DNEADYWLLS DADVSITDMW TESAIDWNAL  420
DAIHEDYSIA DVSTPRAQTP PSSTTEVPPS STTGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A9e-27120191274PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006361100.10.0PREDICTED: transcription factor E2FB-like isoform X1
SwissprotQ9FV711e-142E2FB_ARATH; Transcription factor E2FB
TrEMBLA0A0V0IH660.0A0A0V0IH66_SOLCH; Putative transcription factor E2FB-like
STRINGPGSC0003DMT4000151880.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10772484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22220.21e-137E2F transcription factor 1