PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00066.1_g00020.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 439aa    MW: 49228.9 Da    PI: 6.6834
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00066.1_g00020.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.71.2e-09258305455
                              HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              ah+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Sme2.5_00066.1_g00020.1 258 AHSLAERVRREKISERMKLLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 305
                              8*************************9....677*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.54E-10252309No hitNo description
SuperFamilySSF474592.22E-17252324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-17254322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.682254304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-6258305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-11260310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MEKGNLFMSD DNTPMGSYEQ LQNCFFNPNL DNNTNNSDPF ESALSSMVSS PVTIPNNSGG  60
GDNFVLRELI GRLGSICNSR EMSPNSYNMN NNNSTNNSCY STPLNSPPKL NLSMMGNLPP  120
TQFTTDPGFA ERAARFSCFA TNMESGQLSR VSSNHSIKIQ EFKDVNLVDS RENSSVSEQI  180
IDTNSRKRKS ISKGKSTKIA NEKNESNAKR SKSEENENKA AKEEQKAAVE ENKDNQKPPE  240
PPKDYIHVRA RRGQATDAHS LAERVRREKI SERMKLLQDL VPGCNKVTGK AVMLDEIINY  300
VQSLQRQVEF LSMKLATVNP RMDFNMEALL SKDMFQSRGS LAHNMYPSET STQTFPYGFQ  360
SQPNQNYHKG AEFPFPNNPN LIRNSSMQLP PLDGFVEPTP QVPTFFEDDL NRVVQMGFGQ  420
NQNQSFPGNI PNSQMKVEL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1184189SRKRKS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754481e-86HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006358792.10.0PREDICTED: transcription factor bHLH62
SwissprotQ9SRT23e-95BH062_ARATH; Transcription factor bHLH62
TrEMBLM1BDN10.0M1BDN1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000427910.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10572383
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.13e-80bHLH family protein